Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0349 ATGATTAGTACAATTTTGAGAAGATCCTGTTCCATTGTCTCAAGGCGCGCTTTCGCCGCCTCCACGTTGATCGAGTCGATTCCGCTTCTCCAACACCACCTCAATTCATCAGCCGCCGGATATGGTGTGGTTGGTGGTGGTGAGCTTCGGCCATTCTCCAGCTTGTTTGGTGCCAGTGGATTCAAGTCAAAGGCATTTCACGCCCAAGCGGGGCCGTTGAATTTCCGGGCGTCGTTGGTTCCTCAAGCGGAGTATGCTGTAGATGATTACCCTTTCGATGAAGGGCCCAAGGGAAACAATGATGATGGCCTTGAGATAGCGAAGCTTGGGATTGCTCAGGACATTGTGTCTGCTTTGGCCAAGAAAGGTATAGCGAAGCTCTTCCCTATACAGAGAGCTGTTCTGGAACCTGCTATGCAGGGTCGTGATATGATCGGTCGAGCTAGAACAGGAACTGGGAAAACTCTTGCTTTTGGGATACCTATCATGGATAAGATCATTCAGTTTAATGCTAAGCATGGACGAGGAAGGGATCCTCTTGCCTTGGTTTTGGCACCAACTAGAGAACTTGCTCGGCAGGTTGAGAAGGAATTCTATGAGTCAGCACCTAATTTGGATACAATTTGTGTTTACGGGGGTACACCCATTTCACGCCAAATGAGGCAGCTTGACTATGGTGTTGATATTGCAGTAGGCACACCTGGTCGAATTATTGATCTTCTTAACAGAGGTGCTCTAAATTTAAAGGACGTTCAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTCCAAGTTGGCTTTCAGGAAGATGTTGAGAAAATCTTGGAGAGGTTGCCTCCCAAACGTCAAACACTTATGTTCTCAGCAACAATGCCATCTTGGATAAAGCAGCTTACCCGCAATTACCTAAAGGATCCGGTAACCATTGATCTTGTTGGAGATTCTGATCAGAAGCTGGCAGATGGAATTACGCTGTACTCAATTGCAGCAGATATGTATGGAAAAGCAGGAATTATTGGAACTCTAATAACAGAACATGCGAAAGGAGGAAAGTGTATTGTTTTCACCCAAACCAAACGTGATGCTGATCGATTATCATATGCCATGGCAAGAAGCCTTAGGTGTGAGGCCTTGCACGGAGATATTTCACAAGCACAGAGGGAAAGAACTCTGGCTGGCTTTAGAGAGGGCCATTTCAATGTTTTAGTAGCAACTGATGTTGCTGCACGTGGGCTTGATATACCAAATGTTGACCTTGTGATACATTTTGATCTTCCCAATAATTCAGAGATATTTGTTCATCGATCAGGACGGACAGGTCGAGCTGGGAAGAAAGGAACTGCTATCCTTATATATAGCCAAGATCAAACAAGGGCTGTTAGGATTATTGAGCGTGATGTAGGCTGCAGATTTACTGAGCTACCAAGAATTACCGTTGAAGGAGGATCAGTAGACATGTATAATGACATGGGAGGTGGTCGATCTGGCTCTTTTGGAGGCATGCGGGATCGTCGTTCTGGTGATTTTGGTTTTGGCCGTGGTCCAGGATTTGGTCGCTCCAGCTATGGTAATTCTGGTGAGATGGGAAGGTATGGTGGATCAAATTCTGGTCGTTTTGGTGGCCCTGGATCAAGTCAATCAGGAAGTGGGTTTGGGGGGTCTTCTGGTGGACCAAGCTCTGGTCGTTATGGTTCCTTTGGTGGCTCTGGCCCTGGCCCATCAGGAGGTGGACTCGGTAGATCTGGTGGCATAGACCGGGCAGGAACTACCGGAAGATTTGGATTTAGCCGTCCTGGTGGCGGTGGTGGATTTGGCAGTTCAGATCGGTCTGGTAGTTTTGGCTCAGGTCAATCTAGTGCATTTGGTGACAGAAGTTCAAGCCAAAGGAGTGCCTTTGGTGATTCTCATGGTAGTGGTTTTGGTGGGAATGACCTGAATAATGATCAAAGCAATGGTAGAAGGCCCTTCTAA 1971 0.4688 MISTILRRSCSIVSRRAFAASTLIESIPLLQHHLNSSAAGYGVVGGGELRPFSSLFGASGFKSKAFHAQAGPLNFRASLVPQAEYAVDDYPFDEGPKGNNDDGLEIAKLGIAQDIVSALAKKGIAKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGRDPLALVLAPTRELARQVEKEFYESAPNLDTICVYGGTPISRQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKDVQFVVLDEADQMLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIKQLTRNYLKDPVTIDLVGDSDQKLADGITLYSIAADMYGKAGIIGTLITEHAKGGKCIVFTQTKRDADRLSYAMARSLRCEALHGDISQAQRERTLAGFREGHFNVLVATDVAARGLDIPNVDLVIHFDLPNNSEIFVHRSGRTGRAGKKGTAILIYSQDQTRAVRIIERDVGCRFTELPRITVEGGSVDMYNDMGGGRSGSFGGMRDRRSGDFGFGRGPGFGRSSYGNSGEMGRYGGSNSGRFGGPGSSQSGSGFGGSSGGPSSGRYGSFGGSGPGPSGGGLGRSGGIDRAGTTGRFGFSRPGGGGGFGSSDRSGSFGSGQSSAFGDRSSSQRSAFGDSHGSGFGGNDLNNDQSNGRRPF 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0349 656 Gene3D - 326 482 IPR027417 -
Dere05g0349 656 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 135 309 IPR014001 -
Dere05g0349 656 MobiDBLite consensus disorder prediction 608 656 - -
Dere05g0349 656 MobiDBLite consensus disorder prediction 495 656 - -
Dere05g0349 656 CDD DEADc 115 310 - -
Dere05g0349 656 SMART ultradead3 123 326 IPR014001 -
Dere05g0349 656 Gene3D - 105 313 IPR027417 -
Dere05g0349 656 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 338 491 IPR001650 -
Dere05g0349 656 FunFam Nucleolar RNA helicase II 331 490 - -
Dere05g0349 656 Pfam Helicase conserved C-terminal domain 338 443 IPR001650 -
Dere05g0349 656 CDD SF2_C_DEAD 342 452 - -
Dere05g0349 656 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 464 IPR027417 -
Dere05g0349 656 SMART helicmild6 363 443 IPR001650 -
Dere05g0349 656 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 105 490 - -
Dere05g0349 656 MobiDBLite consensus disorder prediction 538 562 - -
Dere05g0349 656 Pfam DEAD/DEAH box helicase 128 297 IPR011545 GO:0003676|GO:0005524
Dere05g0349 656 FunFam ATP-dependent RNA helicase RhlE 97 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0349 Dere-ChrDere05 5033828 5039054 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0349 109 475 Eukaryotic Initiation Factors Gene Family AT3G19760 33.871 8.95e-69 228