Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0346 ATGGCTTTCTACAGGAACTTTTCAAATGAAACAGTTTCACATAGTGTCCTGGAAGAAAAAGGCCAAGGACAAAATGCTGACAGAATCCACAAATCAGTCGGTAATGAATGTGTTGATGCATCTTCTAGTGAGAAAGAATTTGATATGAACATGGATGCTCAGTATCACAGTGATGGTGAGCCAGAAGATGCCGGTAGATTGCAAAATGAGGCTACAGCTAATGATGGAGCTGGTATGAGAGGATCTAACTTACAGTCTACTGGAAGTAGAACAGCTATGGTTGGAAGGTGGGGTTCAACTTTTTGGAAGGACTGCCAACCTATGGGCCATCCGAATGGGGCTGAATATGGGCAGGAATCACAAAGTGGATCAGACTATAGAAATGCTGAAGGGGCTGAAGATAATTCATCGGATGGAAGAGGTGAAAGATTAGATTCCGAAGATGATGATGGACAAAAGGAAGCAGGAAAAGGTCCCAGAGGCCATTCTGATGTCCCTGCTGAGGAGATGCTGTCTGATGAATATTATGAGCAGGAAGAGCACAGTGACTCATTGCATTACAGGGGGGTCCATCAATCCACTGGATCTAATTCTTGGCCTCAACAGATGTCTAATGCTGTCAACAGCCGTGCCAATAGGAATTCTAGGATTTCTGATGTTGTTGAAGATGATGATGGTGATGCTGATTATGAAGAAGAGGATGAAGCAGATGAAGATGATCCTGATGACGCAGACTTTGAGCCTGCCACAAGTGGCCGATCTGCAAACAAGGATAGAGATTGGGAAGGTGAAGACTCAGATGAAGATGATGACAGTGATGAGAATCTAGATGTTTTGGATGATGATGATACCTACTATGCAAGAAAGCCTTTGGGTAGGCAACGTGGTAAACCAGGACGAAATGTAAAATCTACAAGAGAACGCAAAACATATACTGCATCTGGTCGACAAAGAAGAGTTAAAACATCTTTTGAAGAGGATGAGTCAACAGCAGAGGATTCTGAGAGTGAAAGTGATGATGATTTTAAAAGCATGAAGAAGAAAGGTGCAAATGCTCGTAAAAATAATGGGCGATCTTCTGCAACTGCAAGTTTTTCTGGGCGGAACAGTGAGGTTCGCACATCTAGTAGGACAGTTAGGAAGAAGGTATCATATGTTGAAAGTGAAGAGAGTGAAGAAGCTGATGAAGGGAGGAAGAAAAAGTCCCAAAAAGAAGAAATTGAAGAGGAGGATGGTGACTCCATTGAAAAGGTGCTTTGGCATCAGCCAAAGGGCATGGCTGATGAGGCACAGAGGAATAATAGATCAACGGAGCCTGTTTTATGGAGCCACTTTTTTGATTCTGAACCTGATTGGAATGATATGGAATTCCTAATAAAATGGAAAGGCCAATCACATTTGCACTGTCAATGGAAGTCATTTGCTGAGCTGCAAAACCTCAGTGGTTTTAAGAAGGTTTTAAATTATACAAAGAAAGTGGCAGAGGACATCAGGTACAGGAACACAATCTCAAGAGAGGAGATTGAGGTCAATGATGTGAGTAAGGAGATGGATTTAGATATTATCAAGCAAAATAGTCAGGTGGAAAGAATAATTGCAGATAGGATCAGCAAAGATAATTCTGGCAATGTTATTCCAGAATACTTGGTCAAGTGGCAAGGACTGTCTTATGCCGAGGTGACATGGGAGAAGGACATAGATATTGCTTTTGCTCAGCATGCTATTGATGATTACAAGGCTCGTGAGGCTGCAATGTCAGTTCAAGGAAAGATGGTAGATCCCCAACGCAAGAAGAGCAAAGCAAGTTTGAGGAAGCTTGATGAGCAGCCTGAATGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGTTGGAGAAATGACACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTATCAATGCTAGGTTTTCTTCAGAATGCCCAGCAAATCCATGGTCCTTTTCTCGTGGTTGTCCCTTTGTCTACTTTGTCAAACTGGGCTAAAGAATTTAGGAAGTGGCTTCCTGACATGAATGTTATTGTATATGTTGGCAATCGTGCAGGTCGAGAGGTTTGTCAACAATATGAATTTTATAATGATAAAAAGGTTGGAAGGCCTATACAATTTAATACCCTGTTGACTACATACGAAGTAGTTCTGAAGGATAAAGCTGTTCTCTCCAAGATAAAATGGAATTATTTGATGGTTGATGAGGCTCATAGGCTGAAAAATAGTGAGGCACAGTTGTACACAACACTCTCAGAATTTAGCACCAAGAACAAATTGCTTATCACTGGTACTCCACTACAGAACAGTGTTGAAGAGCTATGGGCTTTGCTTCACTTCCTTGATCCTGATAAGTTCAAGAGCAAGGATGATTTTGTTCAAAACTATAAGAATCTGAGTTCGTTCAATGAGAGTGAGCTTGCCAATCTTCATATGGAACTGAGGCCTCACATACTCCGAAGAGTTATCAAGGATGTGGAAAAATCATTGCCCCCAAAAATAGAGCGTATACTTAGAGTTGAAATGTCTCCTCTTCAAAAACAGTATTATAAGTGGATTTTGGAGCGTAACTTTCATGATTTGAACAAAGGAGTTCGTGGGAATCAGGTCTCTCTTCTAAATATTGTGGTTGAATTGAAGAAATGCTGTAACCATCCCTTCCTGTTTGAAAGTGCTGACCATGGTTACGGTGGGGACTCAGGAAGTAGTGACAGCAGTAAACTGGAGAGAATTGTCTTTAGCAGTGGGAAGCTTGTCATACTTGATAAGCTACTTGTTAGATTGCGTGAGACTAAGCATCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGCTGGATATACTGGCTGAGTATATGTCACTTAGAGGGTTTCAATTCCAGAGGCTCGATGGAAGTACAAAGGCTGAGCTAAGACAGCAGGCAATGGATCATTTCAATGCACCTGGGAGTGATGATTTTTGCTTCCTTCTTTCAACACGAGCAGGAGGTCTGGGTATCAATCTTGCCACAGCAGACACTGTCATAATATTTGATTCAGACTGGAATCCCCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTTGAGGAAGATATTTTGGAACGAGCTAAGAAGAAGATGGTTCTCGACCATTTGGTGATTCAAAAATTAAATGCAGAGGGTAGACTGGAGAAGAAAGAGGCCAAAAAAGGAGGAGGTCTTTTTGACAAAAATGAGCTGTCAGCAATCTTAAGATTTGGAGCAGAGGAGCTTTTTAAGGAGGAAAGAAATGATGAAGAAAGCAAGAAACGACTTTTAAGTATGGATATAGACGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGATGCTGAGGGAGAGCAAGCGCATGAGTTGTTGAGTGCCTTTAAGGTTGCTAATTTCCGCAATGATGAAGATGATGGGAGTTTCTGGAGTCGATGGATAAAACCTGAAGCAATTGCTCAAGCTGAAGAAGCTCTGGCTCCACGTGCTGCAAGGAACAAAAAAAGTTATGCAGAGGCCAATCAATCTGAAAGAAGTAGTAAAAGAAAAAAGAAAGAACCTGAGCCTCCTGAGCGGGTTCCGAAGCGCCGGAAAGCAGAGTATTCGGCTCCCGCCACACCAATGCTTGATGGAGCATCAGCTCAAGTGAGGAGTTGGTCATATGGGAATGTGTCCAAAAGAGATGCACTGCGTTTTTCTCGTGCAGTTATGAAATTTGGGAATGAGAGCCAAATCCACTTAATTGCTGCTGAGGTTGGTGGTGCATTTGCTGCTGCTCCACCTGAAGCTCAAATTGAACTCTTCAGTTTTCTAATTGATGGCTGTAAAGAAGCAGTGGAACTTGGAAGTATGGACCCAAAGGGCCCTCTTTTGGATTTCTTTGGTGTCCCGGTGAAGGCAAATGATATGCTAACCCGTGTTCAAGAACTACAGTTATTAGCAAAGCGCATTAGTCGATATGAAGATCCCATTGCTCAATTTCGTGTTTTATCGTATCTTAAACCTTCAAACTGGTCTAAAGGTTGTGGATGGAATCAACTTGATGATGCTAGATTGCTTCTTGGAATTCATTACCATGGATTTGGCAACTGGGAAAAGATAAGATTAGATGAAAGGCTTGGCCTTATAAAGAAGATTGCACCAGTTGAACTACATCACCATGAAACTTTCTTGCCACGAGCTCCCAATTTGAGAGACCGTGCTAATGCCCTCCTGGAACAAGAACTTGCTGTTCTTGGTGGTAAAAATGCCAATAGTAAAGTGGGACGCAAGGCTTCCAAGAAGGAGAGAGAACAAATTTTGAACATTTCCGTGCCTCGTGGGCAGGAGAAGAAAAAACAAGGATCTGCTAAAGTTAATGTGCAGATGAGAAAGGATAGATCCTTGAGGCCTCAGAGGATTGAACCAATAGTAAAAGAAGAGGGAGAAATGTCTGACAATGATGAAGTATATGAGCATTTCAAGGAGGTAAAATGGTCAGAATGGTGTGAGGATGTAATGGTTGAAGAAATGAGAACCTTGAGACGTCTTCACAGGTTGCAGACAACTAGTGCCAATCTTCCAAAGGAAAAGGTGCTTTCCAAAATTCGCAACTACTTGCAGCTTCTTGGGCGAAGGATTGATCTAATTGTTTTAGAACATGAAGAGGAACCCTATAAGCAAGATAGGATGACTACAAGATTGTGGAACTATGTCTCTACCTTCTCCCATCTTTCAGGGGAGAGGCTACATCAAATCTATTCCAAACTTAAACAGGAGCAAGAAGACGTGGCTGGGGTTGGCCCCTCTCACATCAATGGGTCAGTCTCTGGTCCATTTGGGAGGAATGGTAACCCTAACAATCCTTATTCATTCGCTCGACATATGGAGAGACAAAGAGGATACAAAAATGTGACAGCCTACCAAATGCCTGAACCAGTTCATAATACTGGGAAATCTGAAGCTTGGAAACGGAGGAGGAGAGTTGAGGGTGACAGTCATTTCCAAGGTCAGCTGCCATCTCAAAGAAATACGGGTAATGGAATCCAAATATCTGATCCTAACTCACTGGGGATTCTTGGGGCTGGACCATCTGATAGACGTTTCATTAGCGAGAAACCTTACAGGACACGGCCAGGTGGGGTTCCTCCAAGACAGGGCTTCTCTTCAGCTATGCTCTCTGCATTTACATGGCTTCAGCTACTGTATATTCTCTGGAATATTTTTTTGTCCGCCCATGGGAATAATAAGATCTTGCAGATCCCTTTTTGGTGTCCTCTGGCTGATCTGAGAAATACATCCCTAAACATGGGATTTGCATCCTTGAACAAGGTAGCCGAAGCTGGTGATGATCGGGGTTGTGCAAGATGA 5463 0.4225 MAFYRNFSNETVSHSVLEEKGQGQNADRIHKSVGNECVDASSSEKEFDMNMDAQYHSDGEPEDAGRLQNEATANDGAGMRGSNLQSTGSRTAMVGRWGSTFWKDCQPMGHPNGAEYGQESQSGSDYRNAEGAEDNSSDGRGERLDSEDDDGQKEAGKGPRGHSDVPAEEMLSDEYYEQEEHSDSLHYRGVHQSTGSNSWPQQMSNAVNSRANRNSRISDVVEDDDGDADYEEEDEADEDDPDDADFEPATSGRSANKDRDWEGEDSDEDDDSDENLDVLDDDDTYYARKPLGRQRGKPGRNVKSTRERKTYTASGRQRRVKTSFEEDESTAEDSESESDDDFKSMKKKGANARKNNGRSSATASFSGRNSEVRTSSRTVRKKVSYVESEESEEADEGRKKKSQKEEIEEEDGDSIEKVLWHQPKGMADEAQRNNRSTEPVLWSHFFDSEPDWNDMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKVAEDIRYRNTISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSGNVIPEYLVKWQGLSYAEVTWEKDIDIAFAQHAIDDYKAREAAMSVQGKMVDPQRKKSKASLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNVIVYVGNRAGREVCQQYEFYNDKKVGRPIQFNTLLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFKSKDDFVQNYKNLSSFNESELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDSSKLERIVFSSGKLVILDKLLVRLRETKHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGGLFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKDAEGEQAHELLSAFKVANFRNDEDDGSFWSRWIKPEAIAQAEEALAPRAARNKKSYAEANQSERSSKRKKKEPEPPERVPKRRKAEYSAPATPMLDGASAQVRSWSYGNVSKRDALRFSRAVMKFGNESQIHLIAAEVGGAFAAAPPEAQIELFSFLIDGCKEAVELGSMDPKGPLLDFFGVPVKANDMLTRVQELQLLAKRISRYEDPIAQFRVLSYLKPSNWSKGCGWNQLDDARLLLGIHYHGFGNWEKIRLDERLGLIKKIAPVELHHHETFLPRAPNLRDRANALLEQELAVLGGKNANSKVGRKASKKEREQILNISVPRGQEKKKQGSAKVNVQMRKDRSLRPQRIEPIVKEEGEMSDNDEVYEHFKEVKWSEWCEDVMVEEMRTLRRLHRLQTTSANLPKEKVLSKIRNYLQLLGRRIDLIVLEHEEEPYKQDRMTTRLWNYVSTFSHLSGERLHQIYSKLKQEQEDVAGVGPSHINGSVSGPFGRNGNPNNPYSFARHMERQRGYKNVTAYQMPEPVHNTGKSEAWKRRRRVEGDSHFQGQLPSQRNTGNGIQISDPNSLGILGAGPSDRRFISEKPYRTRPGGVPPRQGFSSAMLSAFTWLQLLYILWNIFLSAHGNNKILQIPFWCPLADLRNTSLNMGFASLNKVAEAGDDRGCAR 1820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0346 1820 MobiDBLite consensus disorder prediction 300 327 - -
Dere05g0346 1820 Gene3D - 849 1079 IPR027417 -
Dere05g0346 1820 CDD CD2_tandem 524 580 - -
Dere05g0346 1820 SMART DUF4208_2 1516 1621 IPR025260 -
Dere05g0346 1820 Pfam Chromo (CHRromatin Organisation MOdifier) domain 527 581 IPR023780 -
Dere05g0346 1820 FunFam Chromo domain-containing protein 1 401 526 - -
Dere05g0346 1820 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 849 1079 - -
Dere05g0346 1820 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 938 1089 IPR001650 -
Dere05g0346 1820 Coils Coil 1078 1098 - -
Dere05g0346 1820 ProSiteProfiles Chromo and chromo shadow domain profile. 526 590 IPR000953 -
Dere05g0346 1820 MobiDBLite consensus disorder prediction 115 130 - -
Dere05g0346 1820 MobiDBLite consensus disorder prediction 374 416 - -
Dere05g0346 1820 Pfam Domain of unknown function (DUF4208) 1528 1620 IPR025260 -
Dere05g0346 1820 MobiDBLite consensus disorder prediction 131 169 - -
Dere05g0346 1820 CDD CD1_tandem 411 491 - -
Dere05g0346 1820 ProSiteProfiles Chromo and chromo shadow domain profile. 413 492 IPR000953 -
Dere05g0346 1820 Gene3D - 609 848 IPR038718 -
Dere05g0346 1820 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 191 1634 - -
Dere05g0346 1820 MobiDBLite consensus disorder prediction 222 245 - -
Dere05g0346 1820 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 842 1124 IPR027417 -
Dere05g0346 1820 MobiDBLite consensus disorder prediction 262 280 - -
Dere05g0346 1820 MobiDBLite consensus disorder prediction 188 215 - -
Dere05g0346 1820 SMART chromo_7 524 583 IPR000953 -
Dere05g0346 1820 SMART chromo_7 411 494 IPR000953 -
Dere05g0346 1820 MobiDBLite consensus disorder prediction 1699 1718 - -
Dere05g0346 1820 Coils Coil 1132 1152 - -
Dere05g0346 1820 MobiDBLite consensus disorder prediction 1198 1244 - -
Dere05g0346 1820 Pfam Helicase conserved C-terminal domain 935 1048 IPR001650 -
Dere05g0346 1820 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 630 802 IPR014001 -
Dere05g0346 1820 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 839 IPR027417 -
Dere05g0346 1820 MobiDBLite consensus disorder prediction 1693 1721 - -
Dere05g0346 1820 SMART ultradead3 614 813 IPR014001 -
Dere05g0346 1820 SMART helicmild6 964 1048 IPR001650 -
Dere05g0346 1820 SUPERFAMILY Chromo domain-like 410 493 IPR016197 -
Dere05g0346 1820 FunFam protein CHROMATIN REMODELING 5 isoform X2 528 580 - -
Dere05g0346 1820 MobiDBLite consensus disorder prediction 104 416 - -
Dere05g0346 1820 Pfam SNF2-related domain 637 906 IPR000330 GO:0005524|GO:0140658
Dere05g0346 1820 SUPERFAMILY Chromo domain-like 505 581 IPR016197 -
Dere05g0346 1820 CDD SF2_C_SNF 925 1059 - -
Dere05g0346 1820 MobiDBLite consensus disorder prediction 354 373 - -
Dere05g0346 1820 FunFam Photoperiod-independent early flowering 1 588 862 - -
Dere05g0346 1820 Gene3D - 528 580 - -
Dere05g0346 1820 Gene3D - 1345 1460 - -
Dere05g0346 1820 MobiDBLite consensus disorder prediction 1209 1237 - -
Dere05g0346 1820 Gene3D - 399 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0346 Dere-ChrDere05 4964401 4986904 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0346 640 1075 RAD5 or RAD16-like Gene Family AT1G02670 25.338 2.22e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere05g0346 SNF2_N 1.2e-64 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g0346 05 4964401 4986904 Dere05g0346 05 4964401 4986904 ECH