Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0333 ATGAGAACAGGGACGAATTCTTCCTCTCTTGTCTTTTCCCTATCACCAGACAGAGGAGGAGATTCACCGGAATTCATGACACTCATGGAAGTGAATGGCTTGATTGCATTCAATAATATGAATAGTTTGAATTCTCATAGAAGTTGTTGTAATGATGAATACAACACCCAGGACTTGAACTTTGGGTCTTTGGTTTTGCGGAAAGTGAATCAAACTGGAGAAAAATCGGGAAGTGTAGAACAATTCTGTCGCCCCTTCATTTGTAAAATGCATACTTACCTTTTACTTTTCTGGCAATTTTTAGAATCAAGCGAATTGCAATCAGAAGAAAATAAAGCTTCTATGGAGAAAAATAAGAAAAGAAGGCTCAAAACACCAACCCAGGTTATGGCCCTGGAAAAATTTTATGATGAGCACAAATATCCTACAGAGGAAATGAAATTAGAACTTGCAGAGGAGTTGGGATTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGGTTAAAAGATAAAAGATTGTTGAAAGATGAAACATATGCAAACGGACGACAAGATCGTTCTAGCGGTGTCATCCAGGACCGTGGAAGTGGACTAGGGCAAGATTCATGTGGAAGCACTAAACACGGTGATTATAAGCATCTTGATCCAAAAGAGGTCGAGAGTCATGGCCTTTATGGTCCTATTGCAGATATGACTTATGAACATAGGAACCACTATACTGAAAATGCTAGTGGAATGGATCACACATCATCTGAGAGTAGCTCATCTTTACAAGATCAGTTATATTCTCAAGGCCAGGATCTATATAATTTGAAACCTTCTAGATTTCTGACATCTAACAGAGGTCTGCCACCTTTAACACCCAAAGTTGCAATTAACATTGGATATAAACCATCAGGATATTTGAAAGTGAAGGGTGAGATAGAAAATGCTGCTATAACTGCTGTCAAGAAGCAATTAGGAAGACATTATAGGGAAGATGGTCCACTACTTGGTGTAGAATTTGATCCACTTCCTCCAGGGGCATTTGAGTGCCAAATTGCAGATCCAGTTCATGAATCATTTCATATTGCGAGTCCTGTGCTTCCCAGTCCTCCAGAAGTTTCTACTGTGAAAAGGCAACCCACTCTTAGCTATAGGTATAACTCCAAATATAGTTCCCAAGATTCACATATGGAAGTAGCAGATCTTGGCTCTTTGCATGACAATGATTTCCAGGATAAGAAATCCCGCCAGCAAATGAAGCAAAGGCACACATTTCACAGTTACGCCAATCATTTGCCTGGCAGGAACTCCTCCCTCGATTTGTATGAAGATTCTACTGGAGAAGCACCTGCTTATAATGGTAGTAAAAATCATACAATTGGAACTAAGCATGGTGAAGGGATGAGATCTGATTCTGCTTCTAACCATAGTGATCAGTATGAAGAGGATCTTGCAGTTAAGCAGATGGAGTCACTTTATGGCTATGATAATGTCAATCCAAAGAATGTTCTGAAGAGTGAATATGTAAAATCTAAGCCTTCAAATTCACTACGTAATTCACGCATTTCTATGGATACTGAAGAAAGAGGACTATCTCCAGGGATAGCAAAGGAAGAGAAGTTTAGTGGAGACAAAAAGGCAAGAAAACAATTTCATGATTCAGAAAGAGTAAAGGTGCTTCCAAATGAAACCATGATAGCAAAACGAGTTAGAGATGATCTTCCTCAACAACATAATGTGAAACATTCATCTGTAGCTGAGATGCAACCTCGGAAAAACCGGAGATATGCAGCGGAGATACTCTCTAGTTTTAGCAAGGATGAAACTGCTGAGACCAGTTCCTCACTGGATTAA 1845 0.394 MRTGTNSSSLVFSLSPDRGGDSPEFMTLMEVNGLIAFNNMNSLNSHRSCCNDEYNTQDLNFGSLVLRKVNQTGEKSGSVEQFCRPFICKMHTYLLLFWQFLESSELQSEENKASMEKNKKRRLKTPTQVMALEKFYDEHKYPTEEMKLELAEELGLTEKQISGWFCHRRLKDKRLLKDETYANGRQDRSSGVIQDRGSGLGQDSCGSTKHGDYKHLDPKEVESHGLYGPIADMTYEHRNHYTENASGMDHTSSESSSSLQDQLYSQGQDLYNLKPSRFLTSNRGLPPLTPKVAINIGYKPSGYLKVKGEIENAAITAVKKQLGRHYREDGPLLGVEFDPLPPGAFECQIADPVHESFHIASPVLPSPPEVSTVKRQPTLSYRYNSKYSSQDSHMEVADLGSLHDNDFQDKKSRQQMKQRHTFHSYANHLPGRNSSLDLYEDSTGEAPAYNGSKNHTIGTKHGEGMRSDSASNHSDQYEEDLAVKQMESLYGYDNVNPKNVLKSEYVKSKPSNSLRNSRISMDTEERGLSPGIAKEEKFSGDKKARKQFHDSERVKVLPNETMIAKRVRDDLPQQHNVKHSSVAEMQPRKNRRYAAEILSSFSKDETAETSSSLD 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0333 614 CDD homeodomain 119 174 IPR001356 GO:0003677
Dere05g0333 614 Gene3D - 107 191 - -
Dere05g0333 614 MobiDBLite consensus disorder prediction 459 477 - -
Dere05g0333 614 SUPERFAMILY Homeodomain-like 117 183 IPR009057 -
Dere05g0333 614 SMART HOX_1 117 179 IPR001356 GO:0003677
Dere05g0333 614 ProSiteProfiles 'Homeobox' domain profile. 115 175 IPR001356 GO:0003677
Dere05g0333 614 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 102 614 - -
Dere05g0333 614 MobiDBLite consensus disorder prediction 181 220 - -
Dere05g0333 614 Pfam Homeodomain 119 174 IPR001356 GO:0003677
Dere05g0333 614 MobiDBLite consensus disorder prediction 245 262 - -
Dere05g0333 614 MobiDBLite consensus disorder prediction 185 205 - -
Dere05g0333 614 MobiDBLite consensus disorder prediction 423 477 - -
Dere05g0333 614 MobiDBLite consensus disorder prediction 569 590 - -
Dere05g0333 614 MobiDBLite consensus disorder prediction 243 262 - -
Dere05g0333 614 MobiDBLite consensus disorder prediction 423 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0333 Dere-ChrDere05 4813614 4820923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0333 102 614 Homeobox Transcription Factor Family AT4G03250 42.026 3.18e-93 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Dere05g0333 Homeodomain 5e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g0333 05 4813614 4820923 Dere05g0333 05 4813614 4820923 ECH