Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0325 ATGGGGGAGGAAGAAGTAGAAATAGTTGTGGCTACTACAAGGAGGCTGCCTTCAGATTCTGGTGGTGCCTTCGCAGATTGGGCAACCACTTCCTCCGCCGGACGAGCCACCGCCCCTGACGACCTCTCCCTGGGCTTCAATGCTGGACCCACCTCCGCCGCCGCCGGAGGAACTCCCACCGGAATGTGGCCCGGCTCGTCTAGGTCACTCAACTACGGCCATCCCGAGATGGGCATGGTGGGCCTTCGAGACGTATTCGTGGTGGCCCCCGCTTCCTCCTACCACAACGAAGTCGTCATGCCCGATCCTCACGCCGCCACCATCCATGGCGTCGGCGTCATCCCTCTCCTTACGGCGGCTCCTTGTCTCGACAACGAAACCAGCAACATGCTCAATCTCAGCAATCATAATCGAGGCCGTAGCGGCGGAATTCAGCTGTGGCAGGATCATTACCTGAAGAAGCAAGGCCTTACCGAACACAACAGTACTCCTACCTCCGGGAATCTAGCTAACAGCGGTGGAGTCGGCGGGGGAATAAGCGGCTCGACTTTGAGCTCCGGAGGGACGACGTGCCAAGACTGTGGGAATCAGGCGAAGAAAGATTGTAGTCACAGAAGGTGCCGGACATGCTGCAAGAGCCGAGGTTTTGGTTGCCCTACACACGTGAAGAGCACGTGGGTACCCGCTGCTCGCCGGAGGGAACGCCAGCTCATAGCCGTTGCTGCCGCTGCTGCGGGTGGTGGTGGGTCTACTGGGTCTACATCGGGTGCCAAGAAACCTAGACTCATCACCTCGCAAACCACAACCACCTCCCATACTTCCACTTCTAACACCACTCCTCCTAGGAGCTTCGACACTAGCTCTAGCCATCAAGATGCGAGTTTCAAGGAGTCTTTGCCGGATCGAGTACGTGCATCGGCTGTGTTCAAATGCGTCCGGGTGACGGCGGTGGATGACGGAGACGATCAGTACGCCTATCAGGCGGTTGTGAAGATTGCTGGCCATGTGTTCAAAGGGCTTCTCTATGATCAAGGGATTGAAAATAGAGATAGTTATCCTAATCTGTCTGAACTGCATTTGGGAGGTGGCAGTGGCGGCGACGGTGGAAGCAGCGGTGGCGCCGGCAGAAACGGAGCCACTTCCTCATCTCCTATGCTGGATCCATCTGATGTATATGTAGCAGCTTCAGGTGGGGGGTTCCTTGCAGGTTCAACCTTTGGTAATCCAATAAACTGA 1236 0.5663 MGEEEVEIVVATTRRLPSDSGGAFADWATTSSAGRATAPDDLSLGFNAGPTSAAAGGTPTGMWPGSSRSLNYGHPEMGMVGLRDVFVVAPASSYHNEVVMPDPHAATIHGVGVIPLLTAAPCLDNETSNMLNLSNHNRGRSGGIQLWQDHYLKKQGLTEHNSTPTSGNLANSGGVGGGISGSTLSSGGTTCQDCGNQAKKDCSHRRCRTCCKSRGFGCPTHVKSTWVPAARRRERQLIAVAAAAAGGGGSTGSTSGAKKPRLITSQTTTTSHTSTSNTTPPRSFDTSSSHQDASFKESLPDRVRASAVFKCVRVTAVDDGDDQYAYQAVVKIAGHVFKGLLYDQGIENRDSYPNLSELHLGGGSGGDGGSSGGAGRNGATSSSPMLDPSDVYVAASGGGFLAGSTFGNPIN 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0325 411 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 130 394 IPR007818 GO:0003700|GO:0006355
Dere05g0325 411 NCBIfam LRP1 C-terminal domain 299 346 IPR006511 -
Dere05g0325 411 MobiDBLite consensus disorder prediction 248 294 - -
Dere05g0325 411 MobiDBLite consensus disorder prediction 243 297 - -
Dere05g0325 411 MobiDBLite consensus disorder prediction 357 385 - -
Dere05g0325 411 NCBIfam putative zinc finger domain, LRP1 type 190 232 IPR006510 -
Dere05g0325 411 Pfam Domain of unknown function (DUF702) 188 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0325 Dere-ChrDere05 4673262 4675597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0325 10 391 C2H2 Transcription Factor Family AT5G12330 49.392 1.56e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Dere05g0325 DUF702 1.2e-61 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g0325 05 4673262 4675597 Dere05g0325 05 4673262 4675597 ECH