Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0316 ATGGGCAACTGTTGCTCCGGTAAGGGCAGCGATGCCCCGGTCTTTGACGACGAAAAGGGAGAAGCAAACTTGGAAAACCAGCAGAATAATGCAGGAGGCAGCAACAAGGACACCACGTCCACCACCCCGCCAACCGCCAAGCCTTCTCCGGCACCGTCTCCTCCTCCGGCCAAAAAAACCGGTCCAATCGGCCCGGTCCTTGGACGGCCCATGGAAGACGTGAAGGCCACGTATAGCATAGGTAAGGAACTAGGGCGAGGGCAATTCGGGGTCACGCATTTATGCACGCACAAGGTGACGGGTGAGCAGTTTGCATGCAAAACCATAGCCAAGAGGAAGCTGGTGAACAAGGAGGATATTGAGGATGTAAGGAGGGAGGTCCAAATCATGCACCATTTGGCTGGCCAGCCTAATATTGTGGAGCTCAAAGGTGCCTACGAGGACAAGCAATCGGTCCATCTTGTCATGGAGCTGTGTGCCGGCGGCGAGCTCTTCGACAGGATCATCGCCAAGGGTCATTACACCGAGCGAGCTGCGGCGTCGTTGCTGAGAACTATAGTTCAGATCGTCCACACTTGCCACTCCATGGGTGTCATCCATAGAGATCTTAAGCCTGAGAATTTCCTCTTGCTTAATAAGGATGAGAATTCTCCCCTCAAGGCCACCGATTTCGGTCTATCCGTTTTTTACAAGCAAGGAGAGGTATTTAAAGACATTGTTGGCAGTGCATATTACATTGCACCTGAGGTGTTGAAGAGGAAATATGGGCCAGAAGTTGACATTTGGAGTGTTGGCGTCATGCTTTACATTCTTCTCTGTGGTGTTCCTCCATTTTGGGCAGAATCTGAAAATGGAATTTTCAATGCTATCTTACGAGGCCAACTTGATTTTTCAAGCGATCCATGGCCCAGCATATCACCTTCAGCAAAAGATCTTGTTAGGAAAATGTTGAATTCGGATCCCAAACAGAGGCTCACAGCCTATCAAGTCTTGAATCATCCGTGGATCAAGGAGGATGGAGAAGCACCAGATAAACCTCTTGACAATGCTGTGCTGAATAGGCTCAAGCAGTTCAGAGCAATGAACCAATTCAAGAAAGTTGCCCTAAGGGTCATTGCCGGGTGCTTATCGGAGGAGGAAATCATGGGGTTGAAGGAGATGTTCAGGGGGATGGACACTGACAACAGTGGTACCATAACCATTGAAGAGCTTAAGCTAGGGCTGGCAAAGCAGGGTACAAAGCTCAGTGAACAAGAAGTCCAGCAGTTACTGGAAGCTGCTGATGCTGATGGCAATGGAACCATAGATTATGACGAGTTCATCACAGCAACAATGCATTTGAATCGTTTGAACAAAGAAGAACATCTTTATACTGCCTTCCAATATTTTGATAAAGATAATAGCGGGTTCATTACCGTTGAAGAACTAGATCAGGCTCTCCGAGATTTTAACATGCATGATGGAAGGGACATCAACGAACTCCTATCAGAAATTGATTCAGATCACGATGGCCGGATCAACTACGATGAGTTCACAGCAATGATGAGAAAAGGAGCCCCAGAAATTCTAACTAAGAAGAGGCGTAATGATTCATTTGTGAGTTGA 1605 0.4773 MGNCCSGKGSDAPVFDDEKGEANLENQQNNAGGSNKDTTSTTPPTAKPSPAPSPPPAKKTGPIGPVLGRPMEDVKATYSIGKELGRGQFGVTHLCTHKVTGEQFACKTIAKRKLVNKEDIEDVRREVQIMHHLAGQPNIVELKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTCHSMGVIHRDLKPENFLLLNKDENSPLKATDFGLSVFYKQGEVFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLCGVPPFWAESENGIFNAILRGQLDFSSDPWPSISPSAKDLVRKMLNSDPKQRLTAYQVLNHPWIKEDGEAPDKPLDNAVLNRLKQFRAMNQFKKVALRVIAGCLSEEEIMGLKEMFRGMDTDNSGTITIEELKLGLAKQGTKLSEQEVQQLLEAADADGNGTIDYDEFITATMHLNRLNKEEHLYTAFQYFDKDNSGFITVEELDQALRDFNMHDGRDINELLSEIDSDHDGRINYDEFTAMMRKGAPEILTKKRRNDSFVS 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0316 534 ProSiteProfiles EF-hand calcium-binding domain profile. 415 450 IPR002048 GO:0005509
Dere05g0316 534 Pfam Protein kinase domain 78 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g0316 534 ProSitePatterns EF-hand calcium-binding domain. 464 476 IPR018247 -
Dere05g0316 534 ProSitePatterns Protein kinases ATP-binding region signature. 84 111 IPR017441 GO:0005524
Dere05g0316 534 SUPERFAMILY EF-hand 376 516 IPR011992 -
Dere05g0316 534 FunFam Calcium-dependent protein kinase 1 344 519 - -
Dere05g0316 534 FunFam calcium-dependent protein kinase 1 164 343 - -
Dere05g0316 534 SMART efh_1 383 411 IPR002048 GO:0005509
Dere05g0316 534 SMART efh_1 490 518 IPR002048 GO:0005509
Dere05g0316 534 SMART efh_1 419 447 IPR002048 GO:0005509
Dere05g0316 534 SMART efh_1 455 483 IPR002048 GO:0005509
Dere05g0316 534 Gene3D Phosphorylase Kinase; domain 1 80 163 - -
Dere05g0316 534 ProSiteProfiles Protein kinase domain profile. 78 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g0316 534 MobiDBLite consensus disorder prediction 1 69 - -
Dere05g0316 534 MobiDBLite consensus disorder prediction 45 61 - -
Dere05g0316 534 ProSitePatterns EF-hand calcium-binding domain. 392 404 IPR018247 -
Dere05g0316 534 Pfam EF-hand domain pair 384 444 IPR002048 GO:0005509
Dere05g0316 534 Pfam EF-hand domain pair 453 516 IPR002048 GO:0005509
Dere05g0316 534 MobiDBLite consensus disorder prediction 24 44 - -
Dere05g0316 534 SUPERFAMILY Protein kinase-like (PK-like) 62 364 IPR011009 -
Dere05g0316 534 ProSitePatterns EF-hand calcium-binding domain. 499 511 IPR018247 -
Dere05g0316 534 CDD STKc_CAMK 78 335 - -
Dere05g0316 534 ProSitePatterns EF-hand calcium-binding domain. 428 440 IPR018247 -
Dere05g0316 534 Gene3D - 344 518 - -
Dere05g0316 534 PANTHER SERINE/THREONINE-PROTEIN KINASE 73 511 - -
Dere05g0316 534 Gene3D Transferase(Phosphotransferase) domain 1 164 343 - -
Dere05g0316 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Dere05g0316 534 ProSiteProfiles EF-hand calcium-binding domain profile. 490 521 IPR002048 GO:0005509
Dere05g0316 534 SMART serkin_6 78 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g0316 534 FunFam Calcium-dependent protein kinase 1 80 163 - -
Dere05g0316 534 ProSiteProfiles EF-hand calcium-binding domain profile. 379 414 IPR002048 GO:0005509
Dere05g0316 534 ProSiteProfiles EF-hand calcium-binding domain profile. 451 486 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0316 Dere-ChrDere05 4543367 4547822 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0316 1 532 EF-hand Containing Proteins AT5G12180 82.959 0.0 917
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Dere05g0316 Pkinase 2.2e-76 CL0016