Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0308 ATGGCTTTCACAGTGGAGAGGTGCATGAGCAGTAGTAGTGAAGATGAGATTCTGCAGAAGATGGTGTTCACAGTGATGGACAACGAGTCTCCTCACTCTCATCACAGTAAGTCATCATCGTCAGTAGTACCAGCTCCATTCCTCACAAAGACGTACCAGCTCGTGGACGACCCTCTCACTGACCACATTGTGTCTTGGGGTTCTGATGATTCCACCTTCGTTGTGTGGAGACCCCCTGAGTTCGCCAGAGATCTCCTTCCCAACTACTTCAAGCACAACAACTTCTCCAGCTTTGTCAGGCAGCTCAATACCTATGGTTTCAAGAAGGTAGTAGCAGATAGGTGGGAGTTTGCAAATGAGTACTTCAGAAAAGGAGCGAAGCACCTTCTGTGTGAGATCCAGAGAAGAAAAACCCCTCATCATCATCACCACCAACATTACCATGGCCATGATCAACCACCACCACACGATCAATCTCTCTTTTGGAATATAGAAAGCAGTACTCCATTGTTAATAACACCCCCATCTCCTAGTAATAAATCTGCAGCAGCAGCAGCAGGAGGAACTACTAATGATATTCTGAGAGCACTTTCAGAAGACAATCAGAGACTGAGGAGGAAGAACTTGATGCTCTTATCGGAACTCTCACACATGAAGAGCCTGTACAATGACATCATATACTTCATCCAAAACCATGTCAAACCAGTAGATCATCAGCCCCTCGAACAAAGAAGCAGATCAACATGCAGTAACAATCACATTCCCAAGCTCGTAGAATTGGATTCTTCAGTATCACATAGTCAGACTCAATCTGCAAAACTAGATTCATCAGATAGTTCGGTGAAGCTATTTGGGGTTCCACTTAGTGGTGAAAAGAGGTTGCACCCAGAAAACATGGATGAACGAGGATTTGTTGACACTGTTAATTAA 930 0.4452 MAFTVERCMSSSSEDEILQKMVFTVMDNESPHSHHSKSSSSVVPAPFLTKTYQLVDDPLTDHIVSWGSDDSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFRKGAKHLLCEIQRRKTPHHHHHQHYHGHDQPPPHDQSLFWNIESSTPLLITPPSPSNKSAAAAAGGTTNDILRALSEDNQRLRRKNLMLLSELSHMKSLYNDIIYFIQNHVKPVDHQPLEQRSRSTCSNNHIPKLVELDSSVSHSQTQSAKLDSSDSSVKLFGVPLSGEKRLHPENMDERGFVDTVN 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0308 309 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 36 263 IPR027725 -
Dere05g0308 309 Pfam HSF-type DNA-binding 47 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere05g0308 309 Coils Coil 194 214 - -
Dere05g0308 309 SUPERFAMILY "Winged helix" DNA-binding domain 44 136 IPR036390 -
Dere05g0308 309 ProSitePatterns HSF-type DNA-binding domain signature. 86 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere05g0308 309 SMART hsfneu3 43 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere05g0308 309 PRINTS Heat shock factor (HSF) domain signature 47 70 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere05g0308 309 PRINTS Heat shock factor (HSF) domain signature 98 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere05g0308 309 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere05g0308 309 Gene3D - 39 138 IPR036388 -
Dere05g0308 309 FunFam Heat stress transcription factor B-4 39 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0308 Dere-ChrDere05 4429973 4431599 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0308 42 236 HSF AT1G46264 62.679 5.78e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Dere05g0308 HSF_DNA-bind 3.8e-32 CL0123