Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0292 ATGGATGCAGGCTCTTCAAGTTCTACAAATTTGAAAGCACAATCTCGGTGCCCTCTTCAGGAGCAGTTTATTCAGAGAACAAACTCCAAAGAAAATTTGGATAGATTCATACCTAATCGTTCAGCCATGGACTTCGATTACGCACACTACATGCTAACGGAGGGGGCAAAAGGTAAGGAAAATCCCGCGATGAACTCACCCTCGGCCTACCAGAAGCAGCTTGCAGAAGCCATGAACATGAATCGGACGCGAATTTTAGCTTTCAAGAACAAACCACCTGCACCGGTGTCGTTAATGGCACACGAGTCCTCCACTGTTCACCAGGATAAATCCACTAAGCCCCGGCGGTTTATTCCTCAGACTTCTGAGAGGACACTGGATGCTCCAGACCTTGTGGATGATTACTACCTCAATTTACTAGATTGGGGAAGCAGTAATGTTCTATCAATTGCACTTGGGAACACAGTGTATTTATGGGACGCCACTAACGGATCCACTTCAGAACTGGTCACTGTTGATGATGAAAATGGACCTATTACAAGCCTTAGCTGGGCTCCAGACGGAAGGCATATAGCTGTTGGCTTGAACAATTCTGAAGTGCAACTTTGGGACACCGCTTCAAATCGACAGTTGAGAACTTTGAGAGGCGGTCATAGGCAGCGAGTAGGGTCTTTGGCATGGAACAATCACATACTCACAACAGGAGGAATGGATGGTAGAATTGTGAACAACGATGTAAGAATTAGATCACACATTGTTGAAACCTACACGGGACATGAACAAGAGGTTTGCGGGCTGAGATGGTCAGCCTCAGGTCAACAATTAGCTAGCGGAGGAAATGACAATCTGCTTTTTGTATGGGACAGAGCTATGGCATCTTCTAATTCAGCAACACAATGGCTTCACAGGCTTGAGGAACACACATCTGCAGTAAAAGCCCTTGCTTGGTGTCCTTTCCAAGGGAACTTGCTCGCGTCAGGGGGAGGAAGTGGAGATCGATGCATTAAGTTCTGGAACACCCACACAGGTGCTTGCTTGAACTCAGTTGACACTGGGTCTCAAGTTTGTGCCTTGTTGTGGAACAAGAATGAGAAGGAGTTACTTAGCTCTCATGGATTTTCCCAGAACCAGCTAACACTTTGGAAATACCCGTCAATGGTGAAAATGGCTGAGCTTAATGGTCATACTTCAAGAGTTCTTTATCTGGCTCAGAGCCCAGATGGTTGCACAGTCGCATCAGCAGCTGCAGATGAAACATTGAGATTCTGGAATGTGTTTGGAGCTCCAGAAGCAGCTAAACCAGCTCCAAAATCAAGAGTGGAGCCATTTTCAAATGTTGGGATTAAGATAATCATGCAAACTGATGAGGATGTCGGGAATATTGCTATGGCTGTCCCTCTTCTAGTTTCTAAAGCACTCGAACTATTTCTGCTCGATTTATGTGATTGGACATATGATATAACTCTGAGGAAGGGCAAAGACCATGAATTCTTCTCATTTTTTTGTGCCTTGGCTTCTACTTTAGATCTGAAAGTGTCTATAACTAAACGCCCCCCTTCACACATGCATAACATGTGGACACAAAAATCTGCAAAAATAAAAGGTTGGAATGATGTTGCTTCTGAAACATGTTATGTTGTTTGTGTATGTGCTTCACTCTTCTCTCTTGTGTTTAACTGGTTGTGTTGTTTGTTAATGGTTCTGAAAGATGTTGTTCGAAAGGTTCCTGATTTAGGTGGTCCTGTTGGTACTGGTGATGAGCGTACTATCACTAAGAAAAGGTTTGTGCTTTTTTAG 1797 0.4413 MDAGSSSSTNLKAQSRCPLQEQFIQRTNSKENLDRFIPNRSAMDFDYAHYMLTEGAKGKENPAMNSPSAYQKQLAEAMNMNRTRILAFKNKPPAPVSLMAHESSTVHQDKSTKPRRFIPQTSERTLDAPDLVDDYYLNLLDWGSSNVLSIALGNTVYLWDATNGSTSELVTVDDENGPITSLSWAPDGRHIAVGLNNSEVQLWDTASNRQLRTLRGGHRQRVGSLAWNNHILTTGGMDGRIVNNDVRIRSHIVETYTGHEQEVCGLRWSASGQQLASGGNDNLLFVWDRAMASSNSATQWLHRLEEHTSAVKALAWCPFQGNLLASGGGSGDRCIKFWNTHTGACLNSVDTGSQVCALLWNKNEKELLSSHGFSQNQLTLWKYPSMVKMAELNGHTSRVLYLAQSPDGCTVASAAADETLRFWNVFGAPEAAKPAPKSRVEPFSNVGIKIIMQTDEDVGNIAMAVPLLVSKALELFLLDLCDWTYDITLRKGKDHEFFSFFCALASTLDLKVSITKRPPSHMHNMWTQKSAKIKGWNDVASETCYVVCVCASLFSLVFNWLCCLLMVLKDVVRKVPDLGGPVGTGDERTITKKRFVLF 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0292 598 Gene3D Histone, subunit A 441 496 IPR009072 GO:0046982
Dere05g0292 598 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 172 209 - -
Dere05g0292 598 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 131 426 IPR011047 -
Dere05g0292 598 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 392 425 - -
Dere05g0292 598 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 20 434 IPR033010 GO:0010997|GO:0097027|GO:1904668
Dere05g0292 598 Pfam Anaphase-promoting complex subunit 4 WD40 domain 171 229 IPR024977 -
Dere05g0292 598 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 256 288 - -
Dere05g0292 598 Pfam WD domain, G-beta repeat 253 288 IPR001680 GO:0005515
Dere05g0292 598 Pfam WD domain, G-beta repeat 301 339 IPR001680 GO:0005515
Dere05g0292 598 Pfam WD domain, G-beta repeat 389 424 IPR001680 GO:0005515
Dere05g0292 598 ProSiteProfiles Trp-Asp (WD) repeats profile. 172 213 IPR001680 GO:0005515
Dere05g0292 598 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 448 492 IPR003958 -
Dere05g0292 598 ProSiteProfiles Trp-Asp (WD) repeats profile. 392 425 IPR001680 GO:0005515
Dere05g0292 598 SUPERFAMILY Histone-fold 452 493 IPR009072 GO:0046982
Dere05g0292 598 ProSitePatterns Trp-Asp (WD) repeats signature. 411 425 IPR019775 -
Dere05g0292 598 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 288 IPR001680 GO:0005515
Dere05g0292 598 SMART WD40_4 119 160 IPR001680 GO:0005515
Dere05g0292 598 SMART WD40_4 385 424 IPR001680 GO:0005515
Dere05g0292 598 SMART WD40_4 207 245 IPR001680 GO:0005515
Dere05g0292 598 SMART WD40_4 297 339 IPR001680 GO:0005515
Dere05g0292 598 SMART WD40_4 342 382 IPR001680 GO:0005515
Dere05g0292 598 SMART WD40_4 249 288 IPR001680 GO:0005515
Dere05g0292 598 SMART WD40_4 165 204 IPR001680 GO:0005515
Dere05g0292 598 Gene3D - 81 427 IPR015943 GO:0005515
Dere05g0292 598 CDD WD40 154 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0292 Dere-ChrDere05 4268575 4272183 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0292 443 594 CCAAT-HAP5 Transcription Factor Family AT3G12480 36.076 4.36e-17 80.5