Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0287 ATGTATATACGTGTATGTACTGTCCTAAGAGACCTTTTGACAAGTGATATGTTCTCTACGCGAAAAGACTTCGCTTTCATATCTCAATTCTCTTTCATTCGAAGCTTTGCTTTTTATCTATACGAAAAGCTTTGTCTGTCATTGTTGCTAGGGTTTGGATTGTTCCTCTTATCTGGGGTTCTTTTTTCTCTCCAAGTTCTTCTTTGGTGGTGTAAATGTTCTGTGTTTGAAAACATGAAGAAGAAACTAGATACTCGTTTCCCAGCTGCTCGGATTAAGAAAATCATGCAAACTGATGAGGATGTCGGGAAGATTGCTATGGCTGTCCCTCTTCTAGTTTCTAAAGCACTCGAACTATTTCTGCAAGATTTATGTGATCGGACATATGATATAACTCTGAGGAGGGGGGCAAAGACCATGAATTCTTTTCATTTAAAGCAGTGTGTACAGACTTTTAATGTCTTTGATTTTCTGAAAGATGTTGTTCGAAAGGTTCCTGATTTAGGTGGTCCTGTTGGTACCGGTGATGAGCGTACTATCACTAAGAGAAGGAAAGTTGTTGAAGACAACGAAGATAACAGCCTTGATGAGACAAGAAAAAATAAGACGCCAGAGCTAGGACATACAGGTGGAAGAGGAAGAGGCAGGGGCCGAGGTAGGGGCCGTGGACGAAGTAGTAGAACAGCAGATCAAGAGATGACTGCAGCCAAGTTTGAAGACAGATCTGATATACTGAAGCAAAATGGTAATAATTGCACTAGAAGCAATGAGAGCCAGGAAGATTTGATAGACCCTGAAGAAGTGAAGGGCATCGATCCAGTTAGCAAGACAGCAGAAGTGCCTGTCCGAAATTTTGACTTAAATATGGACCTGGACGAGAATGGGGATTTGCCAGCCGTGACAGTGCCTTTCCCGGTTGGTTCACCTGCAAAATTGACAACTGAATTGAAGCATGAGGAATTCCCTGGCTGGTCATTGTCTGATGTGGAAAAAATGGCCATTGATCCCGTGCAGCTGGCCAACATAAATAGAAGGATGGATGAAGATGAGGAAGATTATGATGAAGAAAGCTAG 1074 0.4209 MYIRVCTVLRDLLTSDMFSTRKDFAFISQFSFIRSFAFYLYEKLCLSLLLGFGLFLLSGVLFSLQVLLWWCKCSVFENMKKKLDTRFPAARIKKIMQTDEDVGKIAMAVPLLVSKALELFLQDLCDRTYDITLRRGAKTMNSFHLKQCVQTFNVFDFLKDVVRKVPDLGGPVGTGDERTITKRRKVVEDNEDNSLDETRKNKTPELGHTGGRGRGRGRGRGRGRSSRTADQEMTAAKFEDRSDILKQNGNNCTRSNESQEDLIDPEEVKGIDPVSKTAEVPVRNFDLNMDLDENGDLPAVTVPFPVGSPAKLTTELKHEEFPGWSLSDVEKMAIDPVQLANINRRMDEDEEDYDEES 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0287 357 FunFam dr1-associated corepressor homolog 79 164 - -
Dere05g0287 357 MobiDBLite consensus disorder prediction 168 237 - -
Dere05g0287 357 Gene3D Histone, subunit A 75 164 IPR009072 GO:0046982
Dere05g0287 357 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 80 197 - -
Dere05g0287 357 MobiDBLite consensus disorder prediction 177 212 - -
Dere05g0287 357 MobiDBLite consensus disorder prediction 223 237 - -
Dere05g0287 357 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 86 149 IPR003958 -
Dere05g0287 357 SUPERFAMILY Histone-fold 80 166 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0287 Dere-ChrDere05 4221568 4226279 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0287 79 346 CCAAT-HAP5 Transcription Factor Family AT3G12480 43.686 8.45e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Dere05g0287 CBFD_NFYB_HMF 9.6e-18 CL0012