Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0283 ATGTCAAGCGGAGCAACCCACTGGTGTTATGAGTGCAGGCAGCCAATTAGGCTTGTAGGGAGAGAAGTCATTTGCCCTTACTGTCATGGAGGCTTTGTGCAAGAACTTAATGAGTTGCATGTCTTTCCACCACTTGTTGCTTTTGAAGAGTTTCATCAGGTGCCTGACATTTTTGATGCCATACATGCTTTTATGGCGCAGAGAGGTTCTGAACCAAGATTTGGGCTGATTGATGCTGTCGATAATTTCTTGAGGCAGAGAATGGCTGGACGATACCCAAACATTGATGTTAGACGGAGGTCTGGTTCTACACCAGTTGCTGAACAGAGTCAGGGTTTTTTCAGTCCTGGTCCTTATTTGATTTTTCATGGTCCTGGAGGCGGTCCTAGGCGTGTTGATTTTGGTGATTACTTTATGGGCCATGGACTGGAAGAATTTATTGAACAGCTCACCATGAATGATCGCAGAGCTCCACCGCCAGCATCGCATTCTTCAATTGATGCAATGCCTACCATAAAGATCACACTAACACATCTTCGCTGTGATTCACATTGTCCAGTCTGTAAAGAAAAATTCGAACTAGGCTCTGAGGCTAGGCAAATGCCATGTAACCATATTTATCACTCTGACTGTATTGTTCCTTGGTTGGTTCAGCATAACTCATGTCCCGTTTGCTGTGTTGAGCTGCCACCTCAAGGACATGGAGCTACTAGATTTTAA 720 0.4472 MSSGATHWCYECRQPIRLVGREVICPYCHGGFVQELNELHVFPPLVAFEEFHQVPDIFDAIHAFMAQRGSEPRFGLIDAVDNFLRQRMAGRYPNIDVRRRSGSTPVAEQSQGFFSPGPYLIFHGPGGGPRRVDFGDYFMGHGLEEFIEQLTMNDRRAPPPASHSSIDAMPTIKITLTHLRCDSHCPVCKEKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCCVELPPQGHGATRF 239
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0283 239 Pfam Ring finger domain 184 225 IPR001841 -
Dere05g0283 239 ProSiteProfiles Zinc finger RING-type profile. 185 225 IPR001841 -
Dere05g0283 239 SMART ring_2 185 225 IPR001841 -
Dere05g0283 239 SUPERFAMILY RING/U-box 165 232 - -
Dere05g0283 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 232 IPR013083 -
Dere05g0283 239 FunFam E3 ubiquitin-protein ligase RING1-like 149 232 - -
Dere05g0283 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 113 230 - -
Dere05g0283 239 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere05g0283 Dere-ChrDere05 4187078 4187797 Dispersed/Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0283 128 230 C3H Transcription Factor Family AT5G01980 44.762 8.41e-24 97.4