Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere05g0283 | ATGTCAAGCGGAGCAACCCACTGGTGTTATGAGTGCAGGCAGCCAATTAGGCTTGTAGGGAGAGAAGTCATTTGCCCTTACTGTCATGGAGGCTTTGTGCAAGAACTTAATGAGTTGCATGTCTTTCCACCACTTGTTGCTTTTGAAGAGTTTCATCAGGTGCCTGACATTTTTGATGCCATACATGCTTTTATGGCGCAGAGAGGTTCTGAACCAAGATTTGGGCTGATTGATGCTGTCGATAATTTCTTGAGGCAGAGAATGGCTGGACGATACCCAAACATTGATGTTAGACGGAGGTCTGGTTCTACACCAGTTGCTGAACAGAGTCAGGGTTTTTTCAGTCCTGGTCCTTATTTGATTTTTCATGGTCCTGGAGGCGGTCCTAGGCGTGTTGATTTTGGTGATTACTTTATGGGCCATGGACTGGAAGAATTTATTGAACAGCTCACCATGAATGATCGCAGAGCTCCACCGCCAGCATCGCATTCTTCAATTGATGCAATGCCTACCATAAAGATCACACTAACACATCTTCGCTGTGATTCACATTGTCCAGTCTGTAAAGAAAAATTCGAACTAGGCTCTGAGGCTAGGCAAATGCCATGTAACCATATTTATCACTCTGACTGTATTGTTCCTTGGTTGGTTCAGCATAACTCATGTCCCGTTTGCTGTGTTGAGCTGCCACCTCAAGGACATGGAGCTACTAGATTTTAA | 720 | 0.4472 | MSSGATHWCYECRQPIRLVGREVICPYCHGGFVQELNELHVFPPLVAFEEFHQVPDIFDAIHAFMAQRGSEPRFGLIDAVDNFLRQRMAGRYPNIDVRRRSGSTPVAEQSQGFFSPGPYLIFHGPGGGPRRVDFGDYFMGHGLEEFIEQLTMNDRRAPPPASHSSIDAMPTIKITLTHLRCDSHCPVCKEKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCCVELPPQGHGATRF | 239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere05g0283 | 239 | Pfam | Ring finger domain | 184 | 225 | IPR001841 | - | |
| Dere05g0283 | 239 | ProSiteProfiles | Zinc finger RING-type profile. | 185 | 225 | IPR001841 | - | |
| Dere05g0283 | 239 | SMART | ring_2 | 185 | 225 | IPR001841 | - | |
| Dere05g0283 | 239 | SUPERFAMILY | RING/U-box | 165 | 232 | - | - | |
| Dere05g0283 | 239 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 147 | 232 | IPR013083 | - | |
| Dere05g0283 | 239 | FunFam | E3 ubiquitin-protein ligase RING1-like | 149 | 232 | - | - | |
| Dere05g0283 | 239 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 113 | 230 | - | - | |
| Dere05g0283 | 239 | Pfam | zinc-ribbon | 6 | 36 | IPR039525 | GO:0061630 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere05g0283 | Dere-ChrDere05 | 4187078 | 4187797 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere05g0283 | 128 | 230 | C3H Transcription Factor Family | AT5G01980 | 44.762 | 8.41e-24 | 97.4 |