Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0278 ATGTCAAGCGGAGCAACCCACTGGTGTTATGAGTGCAGGCAGCCAATTAGGCTTGTAGGGAGAGAAGTCATTTGCCCTTACTGTCATGGAGGCTTTGTGCAAGAACTTAATGAGTTGCATGTCTTTCCACCACATGATGCTTTTGAAGAGTTTCATCAGATGCCTGACATTTTGGATGCCATACAATCTTTTATGGGGTGGAGAGGTTCTGAAACAAGATTTGGGCTGATTGATGCTTTTGATAATTTGATGAGGCAGAGAACGGCTGGACGATACCCGAACATTGATGGTAGACGGAGGTCTGATTCTACACCAGTTGGTGAACAGAGTCAGGGTTTTTTCAGTCCTGGTCCTTATTTGATTTTTCATGGTCCTGGAGGCAGTCCTAGGCGTGTTGATTTTGGGGATTACTTTATGGGCCATGGACTGGAAGAATTTATTGAACAGCTCACCATGAATGATCGCAGAGGTCCACCGCCAGCATCACATTCTTCAATTGATGCAATGCCTACCATAAAGATCACACAAACACATCTTCGCTGTGATTCACATTGTCCAGTCTGTAAAGAAAAATTCGAACTAGGCTCTGAGGCTAGGCAAATGCCATGTAACCATATTTATCACTCTGACTGTATTGTTCCTTGGTTGGTTCAGCATAACTCATGTCCTGTTTGCCGTGTTGAGCTGCCACCTCAAGGACATGGTAGTTCTCGTGGTCCTAGAAGTTGGGGAGGAAGGAATACCAGTCACAGCAGAGACCATGTTAGCTCTCAGAGTGGGGAGAACAGCCAGCAGAACCAGGGACGGAGAAATCCACTGTCAGTTTTGTGGCCATTCCGTTCTAGTTCAAACACTAATCATTATGCCGAGGCTGGGGGAAGTAGCTCTTCTACCAATCAAAACCAGAGCAACGGGACAGGTTATAGTGGATGGTCATTTGATTACTAA 948 0.4557 MSSGATHWCYECRQPIRLVGREVICPYCHGGFVQELNELHVFPPHDAFEEFHQMPDILDAIQSFMGWRGSETRFGLIDAFDNLMRQRTAGRYPNIDGRRRSDSTPVGEQSQGFFSPGPYLIFHGPGGSPRRVDFGDYFMGHGLEEFIEQLTMNDRRGPPPASHSSIDAMPTIKITQTHLRCDSHCPVCKEKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGHGSSRGPRSWGGRNTSHSRDHVSSQSGENSQQNQGRRNPLSVLWPFRSSSNTNHYAEAGGSSSSTNQNQSNGTGYSGWSFDY 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0278 315 SUPERFAMILY RING/U-box 165 232 - -
Dere05g0278 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 232 IPR013083 -
Dere05g0278 315 SMART ring_2 185 225 IPR001841 -
Dere05g0278 315 CDD RING-H2_RNF126-like 185 226 - -
Dere05g0278 315 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Dere05g0278 315 MobiDBLite consensus disorder prediction 241 315 - -
Dere05g0278 315 Pfam Ring finger domain 184 226 IPR001841 -
Dere05g0278 315 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 113 230 - -
Dere05g0278 315 MobiDBLite consensus disorder prediction 92 112 - -
Dere05g0278 315 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Dere05g0278 315 MobiDBLite consensus disorder prediction 231 315 - -
Dere05g0278 315 FunFam E3 ubiquitin-protein ligase RING1-like 149 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0278 Dere-ChrDere05 3947535 3948482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0278 128 268 C3H Transcription Factor Family AT5G01980 39.860 1.50e-28 113