Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0277 ATGGCCGTCACCTTCTCAGAGCTCCACACAGAGTCGGGACTCAAATCCCTCGATGAGTTTCTCTCCGGAAAGACCTATATTTCTGGGAACCAATTGACCAAGGATGACATTAAAGTTTACGCCTTTGTTTCGAAGAACCCGGGTGAGTCGTTTACCAATGCCAGCAAGTGGTACGATGCTGTCTCTTCCCATCTTGCTCAAAGCTTCCCTGGAAAAGCTCAAGGAGTAAGATTTAGCGGCCAAGCTGCTCCTGCCAAGGCGGATGCTCCAGCTGAAGATGATGATGATCTTGATCTCTTCGGTGATGAGACAGAGGAGGAAAAGAAGGCAGCAGAGGCAAGGGAGGCTGCTAAAAAGGAATCCTCCAAGAAGAAAGAGAGTGGGAAGTCTTCTGTTCTGCTTGATGTCAAGCCTTGGGATGATGAGACAGACATGAAGAAGCTGGAAGAGGCTGTTCGTAGCGTGCAGATGCCCGGGCTTCTGTGGGGAGCATCCAAACTGGCTCCTGTTGGTTACGGTATCAAGAAGCTGCAGATCATGATGACTATTGTTGATGACCTCGTGTCCATAGACTCCCTTATTGAGGAACATCTTACTGTTGAGCCATGCAACGAGTATGTCCAAAGCTGTGACATTGTTGCATTCAACAAAATTTAA 657 0.481 MAVTFSELHTESGLKSLDEFLSGKTYISGNQLTKDDIKVYAFVSKNPGESFTNASKWYDAVSSHLAQSFPGKAQGVRFSGQAAPAKADAPAEDDDDLDLFGDETEEEKKAAEAREAAKKESSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMPGLLWGASKLAPVGYGIKKLQIMMTIVDDLVSIDSLIEEHLTVEPCNEYVQSCDIVAFNKI 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0277 218 SMART EF1_GNE_2 129 218 IPR014038 GO:0003746|GO:0006414
Dere05g0277 218 FunFam Elongation factor 1-beta 1 like 123 218 - -
Dere05g0277 218 Gene3D - 122 218 IPR014717 -
Dere05g0277 218 Pfam EF-1 guanine nucleotide exchange domain 131 218 IPR014038 GO:0003746|GO:0006414
Dere05g0277 218 SUPERFAMILY eEF-1beta-like 126 218 IPR036219 -
Dere05g0277 218 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 8 218 - -
Dere05g0277 218 SUPERFAMILY GST C-terminal domain-like 10 66 IPR036282 -
Dere05g0277 218 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 93 101 IPR001326 GO:0003746|GO:0005853|GO:0006414
Dere05g0277 218 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 207 218 IPR001326 GO:0003746|GO:0005853|GO:0006414
Dere05g0277 218 MobiDBLite consensus disorder prediction 103 129 - -
Dere05g0277 218 CDD EF1B 132 218 IPR014038 GO:0003746|GO:0006414
Dere05g0277 218 MobiDBLite consensus disorder prediction 76 129 - -
Dere05g0277 218 Gene3D - 3 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0277 Dere-ChrDere05 3941009 3942712 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0277 1 218 Eukaryotic Initiation Factors Gene Family AT5G12110 72.807 2.22e-110 314