Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0275 ATGGATTCTAATAGAGAAAAAAGGGTGGATGCTGAGCAAGAAAACACATCAGATGGGTCTGATCAGATGGATGAAGATAAGGAGGTAGAAGAAGGGTTAGATCAAGAGGTAGAGAAGAAGATGACTAAGAAGGGGTCATCTTTTTGCGTGAAGTTCTCAGTAGGAAAACCTAAGAGTAAAGCTAACGAAGCATCGAATACAGCTTCACAAATTAGGGTGTGTGATTTCTGTGGAAGACAGTTCAGCTCAGGAAAAGCCCTAGGAGGTCACAGACGATATCATCTTCAAATTCTCAAGCAACAGTCTGAATCTCACGATAAGGTCAAATTCAATCACTTTCTTCCATCAAATAATGACCTAAAAAATAAGCCCAATTCTGAGGATCAATTCGATGATGACGGCGATGATATCGAGTTGAACGGTAAATTAAGATCATCTTTTTCTTGTTGCATTTGCAAGAAGGATTTCCCATCGAGGAAGTCTTTGTTCGGCCACATGAGATCTCATCCTGAGAGGGAATGGAGGGGCATGAACCCTCCTTTTCATGAATACAGTAGTCCTCTGATTCCTCCTCCTCTGAAACGGAAAGTGGAAGAAGAATCAGAAGATCATAGTAATGTTAACAATGGATCATCCTCATCAGTTTCAGAGGTTGTAGTTGATCTATCAGTGTCTTGCTCTCCAAGCTGGTTGAAGAAAGATCGGAGAGGAAGAACATGCATTGGTGCTGCAGAAGCTGCTGATACCCTCATCTTCCTCGCTTCTCATGAGAACCACTTTCTTCCTCCTCCCCGTAGACAAGATGAGATAGCAATCCCAGTGAAGAAGAGGAAGAAGAAGAGTATTGATGCTAGTGAAGAAGACGATATGAAAGCTGATAATGTTAGTGAAGTTGATGATGAGATATGGAAGCTGAAAGAGATGGCTAGAAAGAAAGGGAAGAAGAAGAAGATGCACAAGATCAAGAAGCTTCAAGAGAGGTCTCAAGAATTAGACGAGAAAGAGGATATTCTGATCAGAAATCTGAAGGATGAAACTCTTTCATCACCATCACCGTGCTATGAATGCAGCATTTGTCATAAATCCTTCCCAACTTTTCAAGCCTTAGGAGGACACAGATCCAGACACAACAGAGACAAGAACATTGCTCGCTGTACTAAGGACAAAAAACAAGAAGGTGAAGAAGAAGAAGAAGAACAAGAAGCAGCACAGAAGGTTTGCACCAATGAAACTGTGTCAAGTACTACTGCTCTTGAAGAAGATGGAGCATCACCCATTATTGAAGACAGATTATCTTCTTATGATCAGGATAACGTTCATCAAGAACAAGAAGAATTGGGAGAGGCAAGTCAATCTGGTTCGAAAATTCTGGATTTTGATCTGAATGAGCCTTTTGTTATGGAGGACGTTGACGAATAG 1419 0.4116 MDSNREKRVDAEQENTSDGSDQMDEDKEVEEGLDQEVEKKMTKKGSSFCVKFSVGKPKSKANEASNTASQIRVCDFCGRQFSSGKALGGHRRYHLQILKQQSESHDKVKFNHFLPSNNDLKNKPNSEDQFDDDGDDIELNGKLRSSFSCCICKKDFPSRKSLFGHMRSHPEREWRGMNPPFHEYSSPLIPPPLKRKVEEESEDHSNVNNGSSSSVSEVVVDLSVSCSPSWLKKDRRGRTCIGAAEAADTLIFLASHENHFLPPPRRQDEIAIPVKKRKKKSIDASEEDDMKADNVSEVDDEIWKLKEMARKKGKKKKMHKIKKLQERSQELDEKEDILIRNLKDETLSSPSPCYECSICHKSFPTFQALGGHRSRHNRDKNIARCTKDKKQEGEEEEEEQEAAQKVCTNETVSSTTALEEDGASPIIEDRLSSYDQDNVHQEQEELGEASQSGSKILDFDLNEPFVMEDVDE 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0275 472 MobiDBLite consensus disorder prediction 405 420 - -
Dere05g0275 472 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Dere05g0275 472 MobiDBLite consensus disorder prediction 184 214 - -
Dere05g0275 472 MobiDBLite consensus disorder prediction 370 472 - -
Dere05g0275 472 MobiDBLite consensus disorder prediction 1 15 - -
Dere05g0275 472 Pfam C2H2-type zinc finger 354 376 - -
Dere05g0275 472 Pfam C2H2-type zinc finger 147 171 - -
Dere05g0275 472 Pfam C2H2-type zinc finger 73 96 - -
Dere05g0275 472 ProSiteProfiles Zinc finger C2H2 type domain profile. 354 381 IPR013087 -
Dere05g0275 472 SUPERFAMILY beta-beta-alpha zinc fingers 147 376 IPR036236 -
Dere05g0275 472 ProSitePatterns Zinc finger C2H2 type domain signature. 356 376 IPR013087 -
Dere05g0275 472 MobiDBLite consensus disorder prediction 372 393 - -
Dere05g0275 472 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 51 102 IPR044653 GO:0003700
Dere05g0275 472 Coils Coil 314 341 - -
Dere05g0275 472 Gene3D Classic Zinc Finger 73 169 - -
Dere05g0275 472 ProSiteProfiles Zinc finger C2H2 type domain profile. 147 174 IPR013087 -
Dere05g0275 472 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Dere05g0275 472 MobiDBLite consensus disorder prediction 17 32 - -
Dere05g0275 472 ProSitePatterns Zinc finger C2H2 type domain signature. 149 169 IPR013087 -
Dere05g0275 472 SMART c2h2final6 354 376 IPR013087 -
Dere05g0275 472 SMART c2h2final6 147 169 IPR013087 -
Dere05g0275 472 SMART c2h2final6 72 94 IPR013087 -
Dere05g0275 472 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0275 Dere-ChrDere05 3898832 3900388 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0275 74 180 C2H2 Transcription Factor Family AT2G26940 38.889 1.52e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere05g0275 zf-C2H2_6 3.1e-10 CL0361