Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0272 ATGAGGCTTGCTGGAAAGGTGGCCAACACCACCAAAAAATTTCTGCTGGTAAGACGCTTTGCAGAAGCTTGGAGAGGCATGAAAAGACATTATCTTAATGCACAAGGGAGGTCGAATAGGGGCAAACAAAGACTTAGGATTGAGTGCACGAAGGCTAGAGTGAAACACAGCCACTGGAAAACCCCCAAAAGTACGGCAAGGGAATTTTCAGTGGTTTCAAGGTTTTCTTCTCCTACTGCCTCTAATAGAGGGTTGGCTGGAGAAGAGATGCACTATCGCTGGAAGCAGTATGCTCAACAGTTTCTTATAGTCCCCTGTTCTGCATATGAAATTAGTATTAAAGTAGGAGCTGTGAGTAGCATGATGAGTGGGGGTAATAGCCCAAAGATGCCTAGAGGTCGGCGGTCCTTATTATCAGTTGAAGAAGAAAGTTGCAAAGCTAACTTGGGAGTAGAACCTCCTTTGAAGAAAGGCCCATGGACGTCAGCAGAGGATGAAATTTTGAGAGAATATGTCAAAAAACATGGAGAAGGAAATTGGAATGCAGTCCAAAGGTATTCAGGCCTTGCCCGCTGTGGGAAAAGCTGCCGTCTACGGTGGGCAAATCACTTGAGGCCAGAATTAAAAAAGGGTGCATTTACACCAGAGGAAGAGAGAAAAATTGTGGAGCTCCATGCTCGATGGGGAAACAAATGGGCTAGAATGGCGACAGAGATGCCTGGGCGCACAGACAATGAGATAAAGAATTACTGGAATACTAGACTTAAGAGAAGGCAACGAGCTGGCTTACCAATTTATCCTGCTGATATATGCCAGCGGGTATTAAATGGCAGCCAAGAGAGTCCAAATGTGGGTACTTTGATGAATGGAGCCAGACAGCACTCTGATCTCCCACAAGCAGACAATTTTGATATCCCAGACCTGGATTTCAAAAATTACGATTTCAGTCAGGGGTATCTACCATGTGGACCATCAATTTTAGATATTCCTGAAAGCAGCCTGTTTGAACAAATTGCTGGCTCACCCCATAGTAATAATTCAACGTTGCCAACTATGCATCCCCGAAAACGCCTTCAGGACTCTGAAATACTTTACAATAGATTGGACAATAATATCAGCTGCATGGTCCCAGTATTCGATCAATTTGTTGATTATACTGCTGAGCCACTTCATCATTTGTCTTCTCCATGTGATCTGACCCTTGATGCCAATGATCAGTTTCACGATGATAACCTTCATGGCAGCCATGCCACTTTAAATGGCAATACCTCTTCTTCGGCGCCCATATCTGAGGCAATGAAGTTGGAGCTCCCTTCACTCCAATATTTAGAAACTCAACAAGGTTGCTGGGACGCATATGCATCCCCACTTCCTTCGCTGGAGTCTGTTGATACAATGACTCAATCTTCTCCAGCTGAACAGTATCAGTCATGTACTGCTACTCCACCAAACAATGGTTTGTTAGAATCAATAATCTACCAAACCGAGCTTCAGAAAGGCTCAAATAATGATTCATTGTGGCAGACTCCTGATAATTGCATACTGAATGAATTAGTCAAAAGTTCAACCCTGAATTCCTGTGTGACAGAATGGGACCAACAAGGGTACGCAAACTCTCCCCTAGGTCACTCTTTTGCATCAGTTCCAACTGATTATACTGCTCCTATTATCATGTGCTCAGTCGATGACCTCTGCTTAGTTGAACACACACAAGGTCAGGAAATGAAGCATGAAACAGTTTCACAGGGTCCACCTTTCTTTTCTAAAAGGCAAAAAACTTCAAATCAGACAGACATCACAAGGCCAGATACTATGCTTGCCACGGGTTGGTTCAGGAACCAAAATAGTTATAGCAAGGATCAAAATGTTCTAAAAGACTCTCTAGCTTCACTTGCTGGTGAAGATTTACTAGGTTATTGGTGA 1923 0.4353 MRLAGKVANTTKKFLLVRRFAEAWRGMKRHYLNAQGRSNRGKQRLRIECTKARVKHSHWKTPKSTAREFSVVSRFSSPTASNRGLAGEEMHYRWKQYAQQFLIVPCSAYEISIKVGAVSSMMSGGNSPKMPRGRRSLLSVEEESCKANLGVEPPLKKGPWTSAEDEILREYVKKHGEGNWNAVQRYSGLARCGKSCRLRWANHLRPELKKGAFTPEEERKIVELHARWGNKWARMATEMPGRTDNEIKNYWNTRLKRRQRAGLPIYPADICQRVLNGSQESPNVGTLMNGARQHSDLPQADNFDIPDLDFKNYDFSQGYLPCGPSILDIPESSLFEQIAGSPHSNNSTLPTMHPRKRLQDSEILYNRLDNNISCMVPVFDQFVDYTAEPLHHLSSPCDLTLDANDQFHDDNLHGSHATLNGNTSSSAPISEAMKLELPSLQYLETQQGCWDAYASPLPSLESVDTMTQSSPAEQYQSCTATPPNNGLLESIIYQTELQKGSNNDSLWQTPDNCILNELVKSSTLNSCVTEWDQQGYANSPLGHSFASVPTDYTAPIIMCSVDDLCLVEHTQGQEMKHETVSQGPPFFSKRQKTSNQTDITRPDTMLATGWFRNQNSYSKDQNVLKDSLASLAGEDLLGYW 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0272 640 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 152 204 IPR017930 -
Dere05g0272 640 ProSiteProfiles Myb-like domain profile. 205 255 IPR001005 -
Dere05g0272 640 FunFam Transcription factor GAMYB 212 258 - -
Dere05g0272 640 FunFam MYB-related transcription factor 156 209 - -
Dere05g0272 640 Pfam Myb-like DNA-binding domain 160 219 - -
Dere05g0272 640 SMART sant 156 206 IPR001005 -
Dere05g0272 640 SMART sant 209 257 IPR001005 -
Dere05g0272 640 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 259 IPR017930 -
Dere05g0272 640 SUPERFAMILY Homeodomain-like 154 251 IPR009057 -
Dere05g0272 640 CDD SANT 159 204 IPR001005 -
Dere05g0272 640 CDD SANT 212 255 IPR001005 -
Dere05g0272 640 MobiDBLite consensus disorder prediction 578 597 - -
Dere05g0272 640 Gene3D - 156 209 - -
Dere05g0272 640 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 135 629 - -
Dere05g0272 640 Gene3D - 212 258 - -
Dere05g0272 640 ProSiteProfiles Myb-like domain profile. 152 204 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0272 Dere-ChrDere05 3855405 3861497 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0272 155 636 MYB Transcription Factor Family AT5G06100 37.323 8.29e-88 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere05g0272 Myb_DNA-bind_6 1.9e-14 CL0123