Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0267 ATGGCTGCTGCGGCCATTGGGCAAATCAACTTCACCGAATACCCTAAAGGAGTTAGAACCACCGATTGCTATGAGAAAATGGAGCAAATTGGCGAGGGCGCTTATGGACGAAGTAATCTTGAGCTTCCATATGCTAAATTATCTTTCGATTATAAAGTTCAGGACATAATTAAGTGCATAGAATTATTAGAGTGCACAATGAAAGTTATTAGGTGGTTCCCCATTAATGCTATACGTGAAATCAAAATTCTACGTAAATTAGATCATCCAAATGTGATCAAGCTGAAAGAAACTGTGCAATCACCAGGGCCTGAGAGAGATAAGCCAGATGGTAATAAGTATAAAGGTAGCGTCTATATGGTCATGGAATACATGGAACATGATTTGTCAGCTCTTCTTGACCAGCCTGGGGTGGTTTTGACACCTCCTCAAATTAAGTGTTACATGAAACAGCTTTTGACGGGGCTTCACTATTGTCATGCAAATAAAATACTTCATCGTGACATCAAAGCCTGTAATGTTCTCTTAAACAATGAAGGTATCCTCAAGCTTGCAGATTTTGGACTGGCAAGGCCAATTAAGAATATCCACAGCGATTCAAAGCTTACAAATCCCGTCATTACATTATGGTACAGACCCCCAGAGTTGCTGCTAGGGGCAACAAATTATGGGCCAGCTGTTGATATTTGGTCTGCTGGGTGCATTTTGGCTGAGCTTCTTAATGGCGATTGTATTTTTCATGGAAAAACTGAGGCCGAGACGCTAAATCAAATTTTTGAGCTATGTGGAGCACCAGATGACTCAAGCTGGCCTGGGGTTTCTGATCTGCCTTTATATACTACAATGAAACCATCAAGACCAATGCGAAGACGTCTGGGGGAAGCTTGCAGTCATTTTGAAAAACATGCTTTGGAATTGTTGGAGAGGATGTTGACGCTTAATCCTGCTCAGAGAATTAGTGCCAGGGATGCGCTTCTTGCCGACTATTTCTGGACTGATCCATTACCCAGTGATCCCAAGAGTTTACCCAAGTATGAAGTATCTCGTGAGGCTGAAAGTCCCAGCCGTGAGATGATGCCGCCTTTAAAGAAGCGTTATGGTTCTCAGCTAAGATCTAGCAGCCATCAGCATTATGGCAGTAAGCCATATCCTCGTTCTCAAAAGAGGAGAAAATGA 1176 0.4243 MAAAAIGQINFTEYPKGVRTTDCYEKMEQIGEGAYGRSNLELPYAKLSFDYKVQDIIKCIELLECTMKVIRWFPINAIREIKILRKLDHPNVIKLKETVQSPGPERDKPDGNKYKGSVYMVMEYMEHDLSALLDQPGVVLTPPQIKCYMKQLLTGLHYCHANKILHRDIKACNVLLNNEGILKLADFGLARPIKNIHSDSKLTNPVITLWYRPPELLLGATNYGPAVDIWSAGCILAELLNGDCIFHGKTEAETLNQIFELCGAPDDSSWPGVSDLPLYTTMKPSRPMRRRLGEACSHFEKHALELLERMLTLNPAQRISARDALLADYFWTDPLPSDPKSLPKYEVSREAESPSREMMPPLKKRYGSQLRSSSHQHYGSKPYPRSQKRRK 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0267 391 SUPERFAMILY Protein kinase-like (PK-like) 18 337 IPR011009 -
Dere05g0267 391 SMART serkin_6 24 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g0267 391 FunFam Cyclin-dependent kinase C-2 127 366 - -
Dere05g0267 391 MobiDBLite consensus disorder prediction 367 381 - -
Dere05g0267 391 CDD STKc_CDK9_like 24 330 - -
Dere05g0267 391 ProSiteProfiles Protein kinase domain profile. 24 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g0267 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Dere05g0267 391 MobiDBLite consensus disorder prediction 343 359 - -
Dere05g0267 391 Gene3D Transferase(Phosphotransferase) domain 1 127 363 - -
Dere05g0267 391 MobiDBLite consensus disorder prediction 341 391 - -
Dere05g0267 391 Gene3D Phosphorylase Kinase; domain 1 12 126 - -
Dere05g0267 391 Pfam Protein kinase domain 24 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g0267 391 PANTHER CELL DIVISION PROTEIN KINASE 22 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0267 Dere-ChrDere05 3777209 3780646 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0267 1 353 Core Cell Cycle Gene Families AT5G10270 60.724 2.98e-151 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Dere05g0267 Pkinase 3.2e-61 CL0016