Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0265 ATGGGAAATTCCTGTAGAAAACCCGTTGCTCATGTGTCTTCCTCTAATATTTCTGGAAGGGCAAAGTCTAAGAGTGAGACTAATCAGAATTCAAATTCTTCAGAACAAAAGGCTGCATCACAAAGTTTAGAACCAAACATTGACAGTTCCATCTCTGTTAATCTTAAATCCTTCAGCTTTAATGATCTGAGGGAAGCCACAAAGAACTTCAGACAAGAAAACTTGATTGGGGAGGGAGGGTTTGGGTTTGTTTACAAGGGATGGATTGATGAGAACTCCTTTGCTCCCACAAGACCAGGGAGTGGGATTATGGTGGCCATTAAGAAACTTAAGCCAGAAAGCTTTCAAGGTCACAAGGAATGGCTTGCAGAAGTTAATTATCTAGGCCAACTTCACCATGAAAATCTGGTAAAACTTGTTGGTTATTGCTCAGATGCTGAAAACAGGCTTCTAGTTTATGAGTTTATGCAGAGAGGAAGTCTGGAGAATCATTTATTCAGAAAAGGTGTTCAACCCATAGCCTGGGCTACGCGGATCAATATTGCAGTTGGTGTTGCAAGAGGATTAGCATTTTTGCATACCTTAGATGCAAATGTTATCTACCGTGATTTGAAGGCTTCCAATGTTTTACTTGATTCGGATTTCAACGCAAAGCTTTCAGATTTTGGCTTGGCAAGAGATGGTCCTACCGGAGATAACACTCATGTTTCAACCAGAATTATTGGAACTCAAGGCTATGCTGCGCCAGAGTATGTAGCTACAGGTCACTTGACTCCAATGAGTGATGTATACAGCTTTGGGGTTGTCTTGTTAGAGTTACTAACTGGGAGACGAGCTGTGGAGGGCCGCAGACCTGGAACTTCACAAGAAAATCTGGTGGATTGGGCAATGCCATTTCTGAGTGATGGCAGGCGAGTTTCGAGAATTATGGATACAAGGTTGGGTGGTCAATACTCCAAGAAAGGAGCCCAAGCTGCCGCTGCACTTGCATTGCAATGCCTAAATGCAGATGCCAAACACAGACCAACCATGGTACATGTTCTAGACACATTGGAAGAACTCCATTCCTCAAACACAACAATCCCAATGACTCCACCAAAATCTGGGTCTGGGGATAATAGGATCAAGCATTCTAGTCATCCCCGAAAGTCAACTAGAAATAAACACCAACCGTAA 1176 0.4286 MGNSCRKPVAHVSSSNISGRAKSKSETNQNSNSSEQKAASQSLEPNIDSSISVNLKSFSFNDLREATKNFRQENLIGEGGFGFVYKGWIDENSFAPTRPGSGIMVAIKKLKPESFQGHKEWLAEVNYLGQLHHENLVKLVGYCSDAENRLLVYEFMQRGSLENHLFRKGVQPIAWATRINIAVGVARGLAFLHTLDANVIYRDLKASNVLLDSDFNAKLSDFGLARDGPTGDNTHVSTRIIGTQGYAAPEYVATGHLTPMSDVYSFGVVLLELLTGRRAVEGRRPGTSQENLVDWAMPFLSDGRRVSRIMDTRLGGQYSKKGAQAAAALALQCLNADAKHRPTMVHVLDTLEELHSSNTTIPMTPPKSGSGDNRIKHSSHPRKSTRNKHQP 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0265 391 CDD STKc_IRAK 76 354 - -
Dere05g0265 391 ProSitePatterns Protein kinases ATP-binding region signature. 76 109 IPR017441 GO:0005524
Dere05g0265 391 Pfam Protein tyrosine and serine/threonine kinase 73 350 IPR001245 GO:0004672|GO:0006468
Dere05g0265 391 FunFam Serine/threonine-protein kinase BIK1 33 155 - -
Dere05g0265 391 PANTHER OS01G0588500 PROTEIN-RELATED 28 355 - -
Dere05g0265 391 MobiDBLite consensus disorder prediction 356 391 - -
Dere05g0265 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Dere05g0265 391 MobiDBLite consensus disorder prediction 1 44 - -
Dere05g0265 391 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 156 359 - -
Dere05g0265 391 Gene3D Phosphorylase Kinase; domain 1 45 155 - -
Dere05g0265 391 SMART serkin_6 70 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g0265 391 Gene3D Transferase(Phosphotransferase) domain 1 156 364 - -
Dere05g0265 391 ProSiteProfiles Protein kinase domain profile. 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere05g0265 391 MobiDBLite consensus disorder prediction 8 44 - -
Dere05g0265 391 SUPERFAMILY Protein kinase-like (PK-like) 44 352 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0265 Dere-ChrDere05 3749485 3753992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0265 24 351 Glycoside Hydrolase AT3G07070 49.547 2.76e-104 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Dere05g0265 PK_Tyr_Ser-Thr 5.8e-48 CL0016