Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0253 ATGAGCTGGGAAAGACGTAAGAAACAGAGGAGAGAGGAGTTGAGAGATCGAAGAAGAATGGTGAAATTTCTCAAACCAAACAAGTCCGTGATCGTCCTTCAAGGACGCTATGCTGGTCGCAAGGCCGTGATTGTCCGCATCTTCGACGACGGCACGCGCGACCGACCCTACGGCCACTGCCTCCTCGCCGGAATCAAGAAGTACCCCAGCAAGGTCATCAGGAAGGATTCGGCCAAGAAGACGGCGAAGAAGTCTCGAGTCAAGGCTTTCGTGAAGCTCGTGAACTACCAACACCTCATGCCCACGCGCTACACCCTCGACGTGGATCTCAAGGACGTGGTCACCATCGACGCCCTTCAGTCTAAGGATAAGAAGGTTACGGCCTTGAAGGAGACCAAGAAAAGGTTCGAGGAGAGGTTCAAGTCCGGCAAGAACAGGTGGTTCTTTACGAAGCTTAGGTTCTGA 465 0.5312 MSWERRKKQRREELRDRRRMVKFLKPNKSVIVLQGRYAGRKAVIVRIFDDGTRDRPYGHCLLAGIKKYPSKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDVVTIDALQSKDKKVTALKETKKRFEERFKSGKNRWFFTKLRF 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0253 154 SMART kow_9 23 50 IPR005824 -
Dere05g0253 154 Pfam KOW motif 26 55 IPR005824 -
Dere05g0253 154 Coils Coil 119 139 - -
Dere05g0253 154 CDD KOW_RPL27 25 107 IPR041991 -
Dere05g0253 154 Gene3D - 20 154 IPR038655 -
Dere05g0253 154 SUPERFAMILY Translation proteins SH3-like domain 22 154 IPR008991 -
Dere05g0253 154 ProSitePatterns Ribosomal protein L27e signature. 143 154 IPR018262 GO:0003735|GO:0005840|GO:0006412
Dere05g0253 154 PANTHER 60S RIBOSOMAL PROTEIN L27 20 154 IPR001141 GO:0003735|GO:0005840|GO:0006412
Dere05g0253 154 FunFam 60S ribosomal protein L27 20 154 - -
Dere05g0253 154 Pfam Ribosomal L27e protein family 71 154 IPR001141 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0253 Dere-ChrDere05 3547223 3547986 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0253 20 154 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 83.704 1.77e-82 237