Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0248 ATGCTTCAAAGCTTGGTCCCTCGATCCTCACTCACTGCGAACCCTAACACCAGCTCCTCCATGAAGACCAAGCGCGTGGACCGCGAGCTCGACGAGGGCGGTGACGGTGATGATCCTTCATCATTCAAGAGGCCGAGCACCGGCAGGAATTTCACCGGCGAGGTCTCAGTGTCGGGTGAGAAGACGGTGGAGGAAGGCGAGGGGCACGAGGATCAGGAGCCGGCGTTCGAAGCCACCGAGTCGACCGGTCTCAGACTCCTCGGGCTGTTGCTACAATGCGCCGAGTGCGTCGCCATGGACAACCTGGACGACGCCAGCGACCTCCTGCCGGAGATAGCGGAGCTATCCTCTCCGTATGGCACGTCGCCGGAGCGCGTCGGCGCGTACTTTGCACACGCGCTTCAGGCGCGCGTCGTCAGCTCCTGCCTCGGCACCTACTCGCCTCTCACCGCGAAATCGCACACTTTCACTCAGTCTCAGCGTATATTCAACGCCTTCCAATCATACAACTCCGTCTCTCCTCTCGTGAAATTCTCGCACTTCACCGCCAACCAAGCCATCTTCCAGGCCCTCGACGGAGAGGATTGCGTCCACGTCATCGACCTCGACATCATGCAAGGCCTCCAATGGCCAGGATTGTTTCACATCCTCGCCTCCCGCTCCAAGAAGATCCGATCCATGAGGATCACCGGGTTCGGATCCTCCACCGAGTTGCTCGAGTCAACCGGCCGGCGACTCGCCGACTTTGCGAGTTCACTCGGCTTGCCGTTCGAGTTCCACCCCGTGGAGGGCAAAATCGGAAACATAACCGAACTGAGTCAACTCGGCGTGAGGCCCAACGAGGCCATAGTGGTCCATTGGATGCACCATTGCTTGTACGATATCACCGGGAGCGATTTAGGGACGTTGAGATTGTTGAATTTGCTGAGGCCGAAGCTGATCACGACCGTCGAGCAGGATCTGAGCCACGCCGGGAGCTTCCTCGCGAGGTTCGTGGAGGCGTTGCATTATTACAGCGCGTTGTTCGACGCCCTCGGGGACGGATTGAGTGGGGACAGCACAGAGAGACATACGGTGGAGCAGCAGTTGTTTGGGTGCGAGATAAGGAACATCGTGGCCGTTGGTGGGCCCAAGAGGACCGGCGAAGTCAAGGTGGAGAGATGGGGCGATGAGCTGAGGCGGGTCGGGTTTCGGCCCGTTTCTCTTCGGGGTAACCCGGCTGCACAGGCCAGTCTTTTGCTGGGTATGTACCCTTGGAGGGGGTACACTCTTGTGGAGGAGAATGGGTGTCTAAAGTTGGGGTGGAAGGATCTTTCTCTGTTGACAGCATCTGCTTGGCAGCCGTCGGATTAG 1353 0.5898 MLQSLVPRSSLTANPNTSSSMKTKRVDRELDEGGDGDDPSSFKRPSTGRNFTGEVSVSGEKTVEEGEGHEDQEPAFEATESTGLRLLGLLLQCAECVAMDNLDDASDLLPEIAELSSPYGTSPERVGAYFAHALQARVVSSCLGTYSPLTAKSHTFTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQALDGEDCVHVIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGSSTELLESTGRRLADFASSLGLPFEFHPVEGKIGNITELSQLGVRPNEAIVVHWMHHCLYDITGSDLGTLRLLNLLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLSGDSTERHTVEQQLFGCEIRNIVAVGGPKRTGEVKVERWGDELRRVGFRPVSLRGNPAAQASLLLGMYPWRGYTLVEENGCLKLGWKDLSLLTASAWQPSD 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0248 450 MobiDBLite consensus disorder prediction 1 21 - -
Dere05g0248 450 Pfam GRAS domain family 88 447 IPR005202 -
Dere05g0248 450 ProSiteProfiles GRAS family profile. 77 447 IPR005202 -
Dere05g0248 450 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 70 442 IPR005202 -
Dere05g0248 450 MobiDBLite consensus disorder prediction 43 57 - -
Dere05g0248 450 MobiDBLite consensus disorder prediction 22 39 - -
Dere05g0248 450 MobiDBLite consensus disorder prediction 60 76 - -
Dere05g0248 450 MobiDBLite consensus disorder prediction 1 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0248 Dere-ChrDere05 3468923 3470275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0248 21 450 GRAS Transcription Factor Family AT5G41920 64.828 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dere05g0248 GRAS 3.6e-114 CL0063