Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0240 ATGGAAATTACAGATGCAGATGCTGAAATTCAAAATGATAGAGATTCCATGTCGGATCCTGCTCCTCATCATCATCGTCTACAGATGAGTACTCTAAATGAACAAGGTGATAATTCCAGCTCGGTTCACCAGTCCAGACGACCAAGCCTCTCCTCTTTACAAATACCAGCAAGGTCAATAGAAAGTGCATTATTATCTTCTGCAAAGACAGATGTTTCATCACTGTCAAGTCCAGGTTCCTCTCGAGTAGGACTGCCTCCAAGACCAAATTCAGCAAGAGTCAAGCCTTCCATGAGAAATTTACTTCCACAGAGGAGCTTAAGGGCAAAAAATTGTTCTCCAGATTGTGAAAGGAAAGTTCTAATTGTTGCTGATACTCCCCCATCAGATGATGCTTTGGATAAGCCTTCAGCTTCAACGTCTCTTTCTCATACTAAGGTTTTGTTCCCTTTGTCAACAAAAGCAGCAAATTCATTACCAGTTACACCAGTTGCAAATACAGCTGCAGAGACTGTACGTGGAAGACATCTAGGAAGTGATACTGATTTAAGAAAAATGGAAGCCAAGCATCACATGACTCGATCATTTTCAGTTCCAGTTAATGTCAAAGCTCCTAGTTTAAAGCATACAGGTTCTAGGGGTTTGATCCGAGTGATATCAGCAAGACCACTTCCTGCAGTTGTTGATGGCCATTCAACTGATAATACTTCAGTGCCAGAGATTGCCATTGAAGATGCCACTGAGGACATTCCTGAAGAAGAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGGGGAAGGTGGGGATACACTTAAGATGGAGTGCAGTTGTAGAGGAGACCTTGCGCTTGCTCACCAAGAGTGTGCGGTAAAGTGGTTTAGTATAAAAGGAAACAAGACTTGTGATGTCTGCAAGCAGGATGTCCAAAACCTCCCAGTGACACTGTTGAAAATCCAACGTCCTCATCCTGCTGCTGGACGGCCATCAAATGCCCCACAACAGAGAGAAGCTGCTTATCACAGGATCTGGCAGGATGTACCAGTACTTGTCTTGGTCAGCATGCTAGCTTACTTTTGTTTTCTAGAGCAACTTCTGGTATCAGATATGGGTCCTCGTGCTCTTGCCATCTCACTACCTTTCTCCTGCACTTTTGGACTCCTTTCATCTATGATTGCTTCAGCCATGGTGAGCAGGGATTACATGTGGGCTTATGCTTGCTTCCAGTTTGCAATTGTCATCCTGCTCGCTCATGTATTTTATACTATACGTAAAGTGAATGCGGTTCTCTCTGTTATCCTTTCCTCATTCACTGGATTTGGGATTGCAATGGGTGCAAATTATCTGCTCAATGAATTTTTGAAATGGAGATTAAGAAGGCAGATGCAATCTATAATTCGGAGCCGGACAGAGCAGGAGCAGCAGGAACAAGGACAGCAGCAAGAGCAACATCAATAA 1455 0.4351 MEITDADAEIQNDRDSMSDPAPHHHRLQMSTLNEQGDNSSSVHQSRRPSLSSLQIPARSIESALLSSAKTDVSSLSSPGSSRVGLPPRPNSARVKPSMRNLLPQRSLRAKNCSPDCERKVLIVADTPPSDDALDKPSASTSLSHTKVLFPLSTKAANSLPVTPVANTAAETVRGRHLGSDTDLRKMEAKHHMTRSFSVPVNVKAPSLKHTGSRGLIRVISARPLPAVVDGHSTDNTSVPEIAIEDATEDIPEEEAVCRICLVELGEGGDTLKMECSCRGDLALAHQECAVKWFSIKGNKTCDVCKQDVQNLPVTLLKIQRPHPAAGRPSNAPQQREAAYHRIWQDVPVLVLVSMLAYFCFLEQLLVSDMGPRALAISLPFSCTFGLLSSMIASAMVSRDYMWAYACFQFAIVILLAHVFYTIRKVNAVLSVILSSFTGFGIAMGANYLLNEFLKWRLRRQMQSIIRSRTEQEQQEQGQQQEQHQ 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0240 484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 312 IPR013083 -
Dere05g0240 484 CDD RING_CH-C4HC3_MARCH 257 305 - -
Dere05g0240 484 ProSiteProfiles Zinc finger RING-CH-type profile. 249 311 IPR011016 GO:0008270
Dere05g0240 484 SMART ringv_2 256 305 IPR011016 GO:0008270
Dere05g0240 484 MobiDBLite consensus disorder prediction 1 54 - -
Dere05g0240 484 MobiDBLite consensus disorder prediction 7 22 - -
Dere05g0240 484 MobiDBLite consensus disorder prediction 28 54 - -
Dere05g0240 484 SUPERFAMILY RING/U-box 253 308 - -
Dere05g0240 484 PANTHER OS02G0165000 PROTEIN 20 476 - -
Dere05g0240 484 MobiDBLite consensus disorder prediction 70 95 - -
Dere05g0240 484 Pfam RING-variant domain 257 304 IPR011016 GO:0008270
Dere05g0240 484 MobiDBLite consensus disorder prediction 70 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0240 Dere-ChrDere05 3330855 3342505 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0240 240 311 C3H Transcription Factor Family AT2G37950 46.667 4.76e-13 66.2