Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0227 ATGGAGTTTGTGGGCAAAACTGTTAAGAAGGAGGTCAAGGGGGTTGGGATTATCTCGGGAACAGTGAAATCTTACGATTCATCATCTGGGTTCGTCGAGATCGTTTACGAAGATGGTAATTCTGAGGAATTGGAATCGTCTAACGTAGCTTCTCTTGTGCAAGGTGAACCGGAGCTCGCAGAGGTGAAGCGCCGGGCGGGAAGGAAACCCAAAAAGAGGCGTCGTGTAGAAAGAAAGCATGAAACCAGTGGAAGCTCAGGTAATATTAGTGAGAATTTGGGTATATCCATGCCTAATAATTCTGAATTTAGGGGGGTTTTGGATGAAAATGTTTCTGCTAGTGGGAATTTAAAAGTAAATGGTGAATTAGATAGTGGGTTGAAGAGAAGCCTGGGTATAGTAAATGGGGCTGGAGGGAATTTGGGTTTTGTAACAGAAATTACGGGCAATGTGAATTGGAGTGTTAACTGTAATGGGATCAACGAAAATCAACGGGAGCAAAGTGCGTATGAAGAAAAATCGAAAGAAAGTATATCTACTAATGGAAATTCCATCATTGCGGATTGTGTAAAAGATGGGTTTGATTTGAATGCTAGAATTAACCTGAACGAGGATATGGATCTGAATGGTGGGTGTAGTTCACTTGTTAATACTGAGAATGGCTTGAAGAAAAGGGGTTGTATTGATTTAAATGTGGATGTGAATAATGAAATTGATGACAGCCTGAATGTGGCTGATTTAGGTTGTTCAGCAGTAGAAACATCGAAGCGGGAATGCAATTTTGATTTGAATGTGGAGGTATGTGATGAAGTTAAGGAAACTGAGGGGCATGCTGATGGAAATGGACTGTCAGATGGAGATGGTTTATTTGGTAAGTTGGGGCGAAGCCAAAAGTCAGAGACAGATATTAATCAAAATTCTGTAGAAGATGATAGTGTTAAAAGGAATGTGGATGATATCACAGATTCTATCCAATTGGAGGGAATCAATGGTTCCCTTGTGCATGCAGGTAAAGAGGCTTCGTTAAGTTTGATTGAGGAAAAGGAAGACAGAGTTTACAATGGATGTATTGTGGCTATTGATACTGTTGGGGTTTCAAATGCTATATCTGTTAAGGATTGTGATTCTGTGGAGGTTCAGCAGGAGCATGGTCCTTCTGAAGCCGGTATTGCTATAATTCATGAATGCCAAGATGAGCCAGGGAGTCGGTGTAAAGAAGGAAGTAGGCGAAGGAAGAGAAGAAAACTATCAGATCATCTGAAATCCACCCCAGAGACAGTTTTAAGGAGGAGTTCTCGCCGGGCGTCAGCTATGAAACATGATTCCAGCACTATAAGTTATGATGTGATGGATGATCTGTTAATGTCTCCAGAGCCCAGTGCATTAACAGAAGAAAAAACAATTATTTCTGGTAATGAGCAATATGAACAGTGCAGTGTCCTTCCGCCAAAGTTGCAATTACCCCCTTCTTCTCAATATTTGAACTTAGAAAATATTCCTGTTCTTGATCTTTTTTCCATTTATGCCTGTTTGAGGTCGTTTAGTACTGTACTATTTTTAAGTCCTTTTGAGTTGGAGGATTTTGTAGCTGCATTGAAGACTGTAAATCCTAATATTTTATTTGACAGCATTCATGTTTCTATTTTACAAACTCTTAGAAAGCACTTGCAATACCTTTCCAATGAGGGTTGTGAATCTGCATCCAATTGCCTGAGAAATTTGAACTGGGATTTGTTGGACCTGGTCACATGGCCCATTTTTATGGCTGAGTATCTTCTGATTAATGGTTCACTACTTAAAACTGGTTTTGATCTGAAGCACTTGATGTTCGGAAGTGACTACCACAAGCAGCCTGTAACTGTGAAGATTGAAATTCTCCAATGCCTCTGTGATGATATGATGGAAGTGGAAGCCATAAGGTTGGAGCTTAACAGAAGATCTTTGGTGACGGAGACTGATATGAGTTTTGATCAGAGTATGTACTTTGACATTTGCAAGAAAAGGAGAGCTCTAATGGATGTGTCCGGAGGCTCTTCTCTGACTGAGGAGATTGTTGATGACACAACTGACTGGAACAGTGATGAATGCTGCCTTTGCAAGATGGATGGAAGTTTAATATGCTGTGATGGTTGCCCTGCTGCATTCCACTCGAAGTGTGTAGGAATTGCAAGTGACCATTTACCTGAAGGTGACTGGTATTGTCCTGAGTGTGCAATTGGCAGACATAAGCCTTGGATGAAACCACAAAAATCACTTCGTGGAGCAGACCTTTTAGGAATTGATCCTCATGGCTGTCTTTATTTTAACAGCTTTGGTTACCTGTTAGTGTCAGATTCATCTGACATGGGATCCTTGTTCAATTACTACCACAGAAATGATCTGCATGCTGTAATTGAAGTGCTGAAATCAGCAGATGCTTTCTATGGTGGCATATTAATGGCTATCTACAAGCATTGGGATATTCCTTTTAACTTAAATGGAAAAGCTAGTAGGTTGGAAGTCTTAAATCAAAGTGCTGGCAGAAACATGCAAATGAACTTAGAATATTCTGCTATATATCCATCCTTAGCACCTTTTACATCTTCAGAAACATTCTTGGACAAGAGTCAGGCTAATGATCAAAGAAAGTTTGAAGAAATTTCAACTGTACAACATCTTGGCCAAGAGTTTCGCAAAGCTGGGAAACATTTGGATCCAGTGACAGCAATAGAAAGTCCTTGTGTTGCTTCTGAAGGATCAGCTGATACCACAAAAATGAGATCAGCCACTGATAATCTTCTAATGTATGGACTCTATGATTCCAATGGATCTGATGTGACGTTGAATCAGTCAGGAATACCAGAGAAATCCCATCCAGTTGGTCACTGTTATTTGAGATCTTCCAGCTTAGATGCAAGCCATAAGATAAAATTATCATCTGCACGGACTGGCTATACTGCGTCTACTGTGTCCTCTGGTAATAGTGATACTTCAGAAGTGCCTAGTGGAATTGACTACATAAACTATTACAGCTTTGCTCGAATGGCTTCGTTAGTGGCAGAGGAGTTGATATGTAAATCACCTGAAAAGATCAACAAGAACTTTGTAATGTCTGAAGAAGACTTAATCTCAGAACAAGCAAAGGCCATTATTAAGAAATCTACAAACTTTTACTGGCTGAGTTCTCAAAATGTAAATGCAGCTGCCCGAAAAGAAAAATGTGGATGGTGCTTTTCTTGCAAAGTTGAAAATGATGACAGAGATTGCTTGTTTAACACTGTGGTGATGCCTGTTCAGGAATTGTCTAAAAGTAATTTAGTTGGGCTTGAACTTAATAACCAAAATGCCCATCTCAGAGATGTCATATGTTATATTCTCTCCCTTGAGGATCGATTACGTGGGCTTCTGTTAGGGCCATGGTTGAATCTCTATCATTCTACGAATTGGCGTAAAGATCTTCTAAATGCATCTGATGTTGCATCTGTTAAATGCTTATTACTCACTTTGGAATCCAATTTGCGGCTTCTTGCACTTTCAGCAGATTGGTTGAAACATGTGGATTCTGTTGTTACCATGGGTTCGGCTTGTCATTTTGTGGCCAGTTCACGCTCATCCTCGAGGCATAGTATTGGAAGGAAAAGGACTAGGTGTTCAGATACTGAGCCCAACTCATCTTCTAACACAGGTGGTTTGGCAATATATTGGTGGAGAGGTGCTAGGCTTTCACGTCGTTTATTTAATTGGAAGGTTTTGCCTCGCTCCTTGGTTACCAAGGCTGCTAGACAAGCTGGGTGTACAAAGATACCGGGCATACTATATCCTGAGAATTCAGATTTTGCAAGGAGAAGCAAATACATTGCTTGGCGTGCTGCTGTTGAGACATCAGTTAGTGCGGAGCAGCTTGCTATCCAGGTTAGAGAGCTTGATTCAAACATAAGGTGGCATGACATTGAGAATACTCATCCTCTATATGTGTTGGACAAGGAATCTAGAAAATCAATCAGGCTGTTCAAAAAAGTAATTGTACGCAGGAAGTGCACTGAGAGAGAATCTGTAAAGTATCTTCTTGATTTTGGGAAGAGAAGGGCTGTTCCTGATGTTGTAATGAGACATGGTTCTTTGTTGGAACAATCCTCAAGTGACAGGAAAAAATATTGGCTGTATGAACCTTATGTTCCCTTGCATCTTATAAAGAATTTTGAGGACAAGAAAATTGCTCGCAAGTCCAATGAAATGAAACCAGGAAAAGTTCTGGAAATTGGTGGATTAAATAATAGAGTTCGTCAAAAAGGGGGCTTTTCATATTTGTTTTCTAGGATGGAAAGATCTGACTATCATCAATGTGGTCACTGCAGCAAGGATGTTCCCATAAGGGAAGCTGTGAGCTGCCAGTACTGTAAAGGATTTTTCCACAAGAGGCATGTCAGGAAATCAGGTGGCACTACTGAATGCGCATATTCATGTCACAGATGCCAGGATGGGATGCATGCAAAAGCTAATTCTAAGAGAAGGAAAGTTGAGCCAAAACTAGGGAAGACTCAATCACAAAAGGGTAGAAAGGCCCCCTCAGTAGGTAGATCTGTTAACCTTAAAGGCAGTAAAAAGTCATTAAGTAAGAGGCGGCAAGTAAAGTCTCAAACCAATAAAAAGTTCCCATCAAGTATACCTCTTCGTCGTTCGGCTAGGAAGGCCAAATGCTTGTCTCTGCAAAATAAGAGGAATGGAGGACGTAAAAAAGGAAAGAAAAGTAAATCCAAGAAGGTGACATCTAGGAAGCCTAAGCAAACTGCTTCTCATTCTAAGAAGATGGCAGTAACTTCTGAGCGTAGGAAAAGAACTCATGTCTGTAACAGTTACTGGCTTAATGGTCTTTGGCTCTCTAGAAAGCCAAATGATGAACGAGTAATGCTGTTTAAGGAGAAAAAACGCCTTGCCCCCTGGGAAGGCTTTTATAGCACCTTCGATCAACCTAAATGTCATCTTTGTTCTGGAGATGGATGTACTTTAACTTACATTGCTTGTGAATTCTGTGGAGAGTGGTTTCATGGGGATGCTTTTGGACTCACTCCAGAGAATGTCAGACAACTTATTGGATTTAGGTGCCATGTTTGTCTTGATAGGGCTGCGCCAGTCTGCCCCCATGTGAATAGTAATGCCTTGACTCATGCTGAAATCAATGGCAATGCTGCAACTGAGGGAGCAGAGGAATTATCTAAACCTGGATTACTTCAACCATTGAGTGAGGTTTAA 5229 0.4068 MEFVGKTVKKEVKGVGIISGTVKSYDSSSGFVEIVYEDGNSEELESSNVASLVQGEPELAEVKRRAGRKPKKRRRVERKHETSGSSGNISENLGISMPNNSEFRGVLDENVSASGNLKVNGELDSGLKRSLGIVNGAGGNLGFVTEITGNVNWSVNCNGINENQREQSAYEEKSKESISTNGNSIIADCVKDGFDLNARINLNEDMDLNGGCSSLVNTENGLKKRGCIDLNVDVNNEIDDSLNVADLGCSAVETSKRECNFDLNVEVCDEVKETEGHADGNGLSDGDGLFGKLGRSQKSETDINQNSVEDDSVKRNVDDITDSIQLEGINGSLVHAGKEASLSLIEEKEDRVYNGCIVAIDTVGVSNAISVKDCDSVEVQQEHGPSEAGIAIIHECQDEPGSRCKEGSRRRKRRKLSDHLKSTPETVLRRSSRRASAMKHDSSTISYDVMDDLLMSPEPSALTEEKTIISGNEQYEQCSVLPPKLQLPPSSQYLNLENIPVLDLFSIYACLRSFSTVLFLSPFELEDFVAALKTVNPNILFDSIHVSILQTLRKHLQYLSNEGCESASNCLRNLNWDLLDLVTWPIFMAEYLLINGSLLKTGFDLKHLMFGSDYHKQPVTVKIEILQCLCDDMMEVEAIRLELNRRSLVTETDMSFDQSMYFDICKKRRALMDVSGGSSLTEEIVDDTTDWNSDECCLCKMDGSLICCDGCPAAFHSKCVGIASDHLPEGDWYCPECAIGRHKPWMKPQKSLRGADLLGIDPHGCLYFNSFGYLLVSDSSDMGSLFNYYHRNDLHAVIEVLKSADAFYGGILMAIYKHWDIPFNLNGKASRLEVLNQSAGRNMQMNLEYSAIYPSLAPFTSSETFLDKSQANDQRKFEEISTVQHLGQEFRKAGKHLDPVTAIESPCVASEGSADTTKMRSATDNLLMYGLYDSNGSDVTLNQSGIPEKSHPVGHCYLRSSSLDASHKIKLSSARTGYTASTVSSGNSDTSEVPSGIDYINYYSFARMASLVAEELICKSPEKINKNFVMSEEDLISEQAKAIIKKSTNFYWLSSQNVNAAARKEKCGWCFSCKVENDDRDCLFNTVVMPVQELSKSNLVGLELNNQNAHLRDVICYILSLEDRLRGLLLGPWLNLYHSTNWRKDLLNASDVASVKCLLLTLESNLRLLALSADWLKHVDSVVTMGSACHFVASSRSSSRHSIGRKRTRCSDTEPNSSSNTGGLAIYWWRGARLSRRLFNWKVLPRSLVTKAARQAGCTKIPGILYPENSDFARRSKYIAWRAAVETSVSAEQLAIQVRELDSNIRWHDIENTHPLYVLDKESRKSIRLFKKVIVRRKCTERESVKYLLDFGKRRAVPDVVMRHGSLLEQSSSDRKKYWLYEPYVPLHLIKNFEDKKIARKSNEMKPGKVLEIGGLNNRVRQKGGFSYLFSRMERSDYHQCGHCSKDVPIREAVSCQYCKGFFHKRHVRKSGGTTECAYSCHRCQDGMHAKANSKRRKVEPKLGKTQSQKGRKAPSVGRSVNLKGSKKSLSKRRQVKSQTNKKFPSSIPLRRSARKAKCLSLQNKRNGGRKKGKKSKSKKVTSRKPKQTASHSKKMAVTSERRKRTHVCNSYWLNGLWLSRKPNDERVMLFKEKKRLAPWEGFYSTFDQPKCHLCSGDGCTLTYIACEFCGEWFHGDAFGLTPENVRQLIGFRCHVCLDRAAPVCPHVNSNALTHAEINGNAATEGAEELSKPGLLQPLSEV 1742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0227 1742 Pfam PHD-finger 696 738 IPR019787 -
Dere05g0227 1742 MobiDBLite consensus disorder prediction 1565 1591 - -
Dere05g0227 1742 PANTHER PHD FINGER FAMILY PROTEIN 2 1703 - -
Dere05g0227 1742 ProSiteProfiles Zinc finger PHD-type profile. 693 740 IPR019787 -
Dere05g0227 1742 MobiDBLite consensus disorder prediction 275 307 - -
Dere05g0227 1742 MobiDBLite consensus disorder prediction 1492 1603 - -
Dere05g0227 1742 MobiDBLite consensus disorder prediction 1492 1507 - -
Dere05g0227 1742 SUPERFAMILY FYVE/PHD zinc finger 1639 1700 IPR011011 -
Dere05g0227 1742 SUPERFAMILY FYVE/PHD zinc finger 684 749 IPR011011 -
Dere05g0227 1742 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 682 754 IPR013083 -
Dere05g0227 1742 MobiDBLite consensus disorder prediction 60 95 - -
Dere05g0227 1742 ProSitePatterns Zinc finger PHD-type signature. 696 737 IPR019786 -
Dere05g0227 1742 SMART testlast3 498 558 IPR018501 -
Dere05g0227 1742 Pfam DDT domain 501 554 IPR018501 -
Dere05g0227 1742 MobiDBLite consensus disorder prediction 401 437 - -
Dere05g0227 1742 CDD PHD1_AIRE 695 737 - -
Dere05g0227 1742 ProSiteProfiles DDT domain profile. 498 558 IPR018501 -
Dere05g0227 1742 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1645 1704 IPR013083 -
Dere05g0227 1742 MobiDBLite consensus disorder prediction 418 437 - -
Dere05g0227 1742 SMART PHD_3 695 738 IPR001965 -
Dere05g0227 1742 SMART PHD_3 1651 1698 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0227 Dere-ChrDere05 3061162 3075966 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0227 1 1712 PHD Transcription Factor Family AT5G12400 41.572 0.0 1194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Dere05g0227 DDT 1.2e-11 No_clan