Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0181 ATGATACTTTCGTTGTTTCCTTTCCGACCCGACGGCGAGCAAAACCCAAACGGGGTCGAAGAACAAAACCCAGTCGCTGAAGTAGTTGTTTTCCGACAGAAGTTTTTACGTTCTGACGCTGGTGGGGCATTGCTTCTTATTGTGCTCATTCGCTCACTCCTTTGGATTCCAGTGTCGGTTAGTTTACTGCTCACTGAGTCAATTTGTGCATTCTGTTTGAGGTTGCACAATGTATTAAGTTGCTATCACCCTTTCAGTACAAATGCGAAGATGAGTTCCTTCTCCATTACACGGAAAAAAACACCATTCCAAAAGCACAGAGAAGAAGAAGAGGCAAAGAAGAAGAGAGCAGAAGATGAAACTGCTCGCTTGTATGCTGAGTTTGTCGAGTCATTTCAAGGAGATAGCACTCCGGGGTCAAAGGCTTTTGTTCGAGGAGGAACAATTAATCCAAATGAAAAATTAAAAACAGATTCTGAGGGTGAAAAGTCCAAAGATGGGGTGTCTGGTTCAAAGAAGGGAAGTAGGTATGTCCCGTCTTTCATACCTCCTCCTTTGGCAACCAAGGGAAAAGAATCTGAAAAGAAAAAAGAGGAGGAGAAGCCTAAGGAGAAAGAGAAAGGTAAGTCACGGAACATAGATAATTTTATGGAGGAGTTAAAACATGAGCAAGAGATGAGGGAGAGGCGAAATCAAGAACGTGAGCATTGGCGTGATGGGCGCAATGTAGAACACTCTACTATTAGTCGCTTTGATGAACTGCCTGATGATTTTGATCCAAGTGGGAAACTGCCAGGATCATTTGATGATGGCGATCCACAAACTACAAATCTTTATGTTGGAAACCTCTCACCAAAGGTTGATGAAAATTTTCTTCTCCGAACTTTTGGAAGATTTGGGCCTATTGCTAGTGTGAAGATAATGTGGCCTAGGACAGAGGAGGAGCGAAGACGGCAAAGAAATTGTGGCTTTGTAGCTTTCATGAATAGAGCTGATGGACAGGCTGCTAAAGATGAAATGCAAGGGGTTGTGGTTTATGAGTATGAATTGAAAATTGGATGGGGTAAGTCTGTTGCTCTCCCGTCGCAAGCATTACCTGCTCCCCCGCCAGGGCATATGGCCATCAGGAGTAAGGAGGGTGCCACTGTGATCTTGTCTGGTCCATCAGGTCCAACAGGTCCACCAGTAACTTCTGTGCCAAATCAGAACTCTGAGCTGGTTCTTACTCCTAATGTTCCTGATATAATGGTTACACCTCCTGAGGATGAGCATCTAAGGCATGTGATTGATACCATGGCTTTGTATGTTTTGGATGGAGGATGTGCTTTTGAACAAGCCATTATGGAGAGGGGTCGTGGCAATCCTCTTTTTAATTTCTTGTTTGAGCTCGGGTCCAAGGAACATACCTACTATGTTTGGAGACTCTACTCATTTGCTCAGGGCGACACCCTTCAAAGATGGCGGACAGAACCTTTCATTATGATAACTGGTAGTGGAAGATGGATTCCTCCCTCATTGCCGACAGCAAAAAGTCCAGAACATGAAAAGGAGTCTGGTTCCACACATGCTGCAGGAAGAAGCAGGCGTGTAGAACCTGAAAGAACACTAACTGATGCACAAAGGGATGAGTTTGAGGATATGCTGCGTGCTTTGACACTAGAAAGGAGTCAAATAAGAGAGGCTATGGGGTTTGCTTTGGATAATGCTGATGCAGCTGGAGAGATAGTTGAAGTTTTAACAGAATCCTTGACACTTAAAGAAACCCCTATTCCTACTAAAGTTGCAAGGCTCATGCTTGTCTCTGATGTTCTACATAATAGCAGTGCTCCTGTAAGAAATGCATCTGCATATCGTACCAAGTTTGAAGCAACATTGCCTGACATAATGGAGAGTTTCAATGACTTATATCGTAGCATAACAGGACGTATTACTGCTGAGGCCCTAAAGGAACGAGTTCTAAAAGTTCTGCAAGTGTGGGCTGATTGGTTTCTCTTTTCTGATGCTTATGTGAATGGCTTGCGAGCCACATTCCTTCGATCTGGGAACTCTGGTGTCACACTATTTCATTCAATCTGTGGTGATACACCTGAAATTGAGAAAAATATACATTCTGAAGACACAGTTGATGGCAGCAAAAGCAACCAAGATTCTGCATTGGCAATGGGTCGAGGAGCTGCAATGAAGGAGCTAATGTCACTTCCTCTTGCAGAGCTGGAAAGACGGTGCCGACACAATGGATTGTCGCTTGTTGGCGGTAGGGAAACGATGGTTGCACGGTTGCTTAGTCTGGAGGAGGCAGAAAAGCAAAGGGGTTATGAACTAGATGATGAATTGAAATATGCTCAGAACCAAGGAAGCTCAGGGAGATACTCAAGTAGTCGGAGAGAAACAAGCATTGAGCCTGAACCAGTAGGTTTCTCTGGATGGAATCATTATGCGGAGGATGATTTGCAGTCACAAGGCAAATTGTCAGTACCTCTGCCACCAACCCTGCCCATTCCACAGCCTGAATTTAAATCCTTCACAAAAAAGAAGAATGATCCGGTTTTGCCAACCTCTAAATGGGCTCGAGAGGATGATGAGAGTGACGATGAACAGAAGGGTCGCGGAAAGGGTTTGGGGTTAAGCTACTCATCCTCTGGTAGTGAGAATGCTGGTGATGGGACTATTAAGGCTGATGAATTGGAGTCTGCCGCTGATACAAGCATTTCAGCACAACCTGATAGTGGAATGAATGAAGAGCAGAGGCAGAAGCTGAGACGCCTGGAGGTTGCTTTAATTGAATACCGTGAGTCTCTAGAAGAGAAGGGAAGTAAAAATTTGGAAGAAATTGAGAGAAAAGTCGCAATGCACCGAAAATGGCTGCTAGCAGAGTTTGGGTTATCAGATTCGGGTGAAGATGGTCAAGGGAATAGAAGAACATCCTCAGAGAGGAGAGAGAGGCGTGATGATTCACATGATGCCTCAAGGAAACGCCACCGTAGCCGTAGTCGAAGTCATAGTCCACAACGAAAATCATCAGCAAGAGACAGGGAGAGGGAACATGATGCAGACAGGGACCGTGATAAACACAGAGATAGAGGTTATGATTTTGATAGTGATAGGGGTAGGGACCGGGATAGGGAGAAAAGTGGAAGCAGAGAGAGGGATGATCATGATAGGGAGAGGGGCAGAGATAGGGACCGGAGGAGACGGACAAAATAA 3204 0.4488 MILSLFPFRPDGEQNPNGVEEQNPVAEVVVFRQKFLRSDAGGALLLIVLIRSLLWIPVSVSLLLTESICAFCLRLHNVLSCYHPFSTNAKMSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDSTPGSKAFVRGGTINPNEKLKTDSEGEKSKDGVSGSKKGSRYVPSFIPPPLATKGKESEKKKEEEKPKEKEKGKSRNIDNFMEELKHEQEMRERRNQEREHWRDGRNVEHSTISRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGATVILSGPSGPTGPPVTSVPNQNSELVLTPNVPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPTAKSPEHEKESGSTHAAGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIREAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVTLFHSICGDTPEIEKNIHSEDTVDGSKSNQDSALAMGRGAAMKELMSLPLAELERRCRHNGLSLVGGRETMVARLLSLEEAEKQRGYELDDELKYAQNQGSSGRYSSSRRETSIEPEPVGFSGWNHYAEDDLQSQGKLSVPLPPTLPIPQPEFKSFTKKKNDPVLPTSKWAREDDESDDEQKGRGKGLGLSYSSSGSENAGDGTIKADELESAADTSISAQPDSGMNEEQRQKLRRLEVALIEYRESLEEKGSKNLEEIERKVAMHRKWLLAEFGLSDSGEDGQGNRRTSSERRERRDDSHDASRKRHRSRSRSHSPQRKSSARDREREHDADRDRDKHRDRGYDFDSDRGRDRDREKSGSRERDDHDRERGRDRDRRRRTK 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0181 1067 MobiDBLite consensus disorder prediction 782 917 - -
Dere05g0181 1067 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 350 IPR000504 GO:0003723
Dere05g0181 1067 MobiDBLite consensus disorder prediction 782 798 - -
Dere05g0181 1067 Gene3D - 187 359 IPR012677 -
Dere05g0181 1067 SMART surpneu2 426 480 IPR000061 GO:0003723|GO:0006396
Dere05g0181 1067 MobiDBLite consensus disorder prediction 1003 1060 - -
Dere05g0181 1067 MobiDBLite consensus disorder prediction 155 170 - -
Dere05g0181 1067 Pfam Surp module 426 478 IPR000061 GO:0003723|GO:0006396
Dere05g0181 1067 SUPERFAMILY RNA-binding domain, RBD 269 364 IPR035979 GO:0003676
Dere05g0181 1067 SUPERFAMILY ENTH/VHS domain 540 679 IPR008942 -
Dere05g0181 1067 Gene3D Surp module 414 483 IPR035967 GO:0003723|GO:0006396
Dere05g0181 1067 SMART cwf21_2 911 960 IPR013170 -
Dere05g0181 1067 MobiDBLite consensus disorder prediction 137 213 - -
Dere05g0181 1067 CDD cwf21_RRC1-like 911 960 IPR047491 -
Dere05g0181 1067 MobiDBLite consensus disorder prediction 189 213 - -
Dere05g0181 1067 Pfam cwf21 domain 912 958 IPR013170 -
Dere05g0181 1067 MobiDBLite consensus disorder prediction 99 118 - -
Dere05g0181 1067 MobiDBLite consensus disorder prediction 958 1067 - -
Dere05g0181 1067 SMART 558neu5 543 678 IPR006569 -
Dere05g0181 1067 Coils Coil 213 233 - -
Dere05g0181 1067 Pfam CID domain 543 671 IPR006569 -
Dere05g0181 1067 ProSiteProfiles SAP motif profile. 730 764 IPR003034 -
Dere05g0181 1067 PANTHER RNA PROCESSING PROTEIN LD23810P 89 999 - -
Dere05g0181 1067 Gene3D - 911 962 - -
Dere05g0181 1067 MobiDBLite consensus disorder prediction 503 536 - -
Dere05g0181 1067 ProSiteProfiles SURP motif repeat profile. 428 471 IPR000061 GO:0003723|GO:0006396
Dere05g0181 1067 SUPERFAMILY Surp module (SWAP domain) 402 483 IPR035967 GO:0003723|GO:0006396
Dere05g0181 1067 ProSiteProfiles CID domain profile. 536 681 IPR006569 -
Dere05g0181 1067 Coils Coil 541 561 - -
Dere05g0181 1067 MobiDBLite consensus disorder prediction 840 870 - -
Dere05g0181 1067 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 357 IPR000504 GO:0003723
Dere05g0181 1067 SMART rrm1_1 277 353 IPR000504 GO:0003723
Dere05g0181 1067 Coils Coil 107 127 - -
Dere05g0181 1067 Coils Coil 912 932 - -
Dere05g0181 1067 MobiDBLite consensus disorder prediction 510 536 - -
Dere05g0181 1067 MobiDBLite consensus disorder prediction 970 990 - -
Dere05g0181 1067 Gene3D - 536 683 IPR008942 -
Dere05g0181 1067 CDD RRM_SR140 275 358 IPR035009 -
Dere05g0181 1067 MobiDBLite consensus disorder prediction 101 118 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0181 273 353 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 3.53e-06 49.3