Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0165 ATGGAATTCGACGATGATTACTACAGCGGCGGGGAAGAGGAGGACGAGGACTTGTACAGCGACGATGGTAACGACGCCGAAGATTACGACTTCATCGACCATGCTTCTGATGATTCTGACATCGCTCCCTCGAATCGTCACCAGGCGCAAAACTACATTGTCTTGAGTGAAAGCAACATTCGTCAACGCCAAGAGGGTGATATTACAAAGATATCAACTGTGCTATCCATTTCGAAGGTTGCAGCTAGTCTACTGCTTCGGTACTATTATTGGAATATTGGTAAAATACATGATGAATGGTTTGCAGATGAAGACAAGGTTCGCAGTGCTGTTGGCTTGTTGGAGAAACCTGTTGTGGAATATAAAGATGCTAGCGAGGTAACCTGTGGGATCTGTTTTGATACCTATCCCGGTGGTGAGGTGCTTGATGCTGGTTGTGGCCATCCTTTTTGTAGATCATGTTGGGCAGGTTATATTAGTGTAGCCATCAATGACGGTCCTGGATGTTTGTTGTTGCGGTGTCCTGATCCATCTTGCGGTGCTGCTGTTGGTCAAGATATTATCGATTATTTGGCTTCTGACGAAGAGAAGGAGAAGTACTCTACTTATTTTACTAGATCTTATATTGAGGACAATAGAAAGACAAAATGGTGTCCTGCCCCTGGCTGTGATTATGCTGTGGAGTTTGCTGTTGGTAGTGGAAGCTATGATGTTACGTGCAGCTGCTCATGTAGTTTTTGCTGGAATTGCACTGAGGAAGCACATAGGCCTGTTGATTGTGGTACTGTGGCCAAATGGATATTAAAGAATAGTGCTGAATCTGAAAATATGAATTGGATATTGGCCAATTCAAAACCTTGTCCAAGCTGCAAGCGGCCAATTGAGAAAAACCAAGGTTGTATGCATATGACTTGCACACCACCTTGCAAGTATGAGTTTTGCTGGCTTTGCCTTGGTCCATGGTCTGAACATGGTGAGACAACGGGCGGTTTTTATGCATGTAATCGTTATGAAGATGCAAAAGCAGATAAACAGTTTCAAGAGGCTGAACAACACAGAGAGATAATCAAGAACTCTCTTGAAAGATATTATCACTATTATGAAAGATGGGCAACCAATCAATCGTCCAGGCAAAAAGCTCTCGCCGACCTAGAACAAATGCAAACTGTGCATCTTGAAAAGCTCAGTGACTTACAGTGTCAGCCTGAATCACAGCTAAAATTTATAACGGAGGCCTGGTTACAGATAGTTGAATGCAGACGTGTTTTGAAATGGACATATGCCTATGGCTACTATATACCTGAGGAGGAGAAGGCTAAGAGAGAGTTCTTTGAATACTTGCAAGGTGAAGCTGAGGCTGGATTGGAACGACTTCATCAGTGTGCCGAGAAGGAACTGGAAGTTTACCTCACTGAAAAGGATCCAGAAAAAGATTTTAACAGTTTCCGCACTAAACTTTCTGGACTAACCAGTGTGACACGGACCTTCTTCGAGAATTTAGTGAAAGCTTTGGAGAATGGTTTATCTGATGTGAATTCTCATGCTGCAACCAGCAGAACTGGGAGCTCAAAGAGCTTAGGAAGAAGCTCAAGTGGGAAAAAAATTGAGGGAGGATCCTAG 1620 0.434 MEFDDDYYSGGEEEDEDLYSDDGNDAEDYDFIDHASDDSDIAPSNRHQAQNYIVLSESNIRQRQEGDITKISTVLSISKVAASLLLRYYYWNIGKIHDEWFADEDKVRSAVGLLEKPVVEYKDASEVTCGICFDTYPGGEVLDAGCGHPFCRSCWAGYISVAINDGPGCLLLRCPDPSCGAAVGQDIIDYLASDEEKEKYSTYFTRSYIEDNRKTKWCPAPGCDYAVEFAVGSGSYDVTCSCSCSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPSCKRPIEKNQGCMHMTCTPPCKYEFCWLCLGPWSEHGETTGGFYACNRYEDAKADKQFQEAEQHREIIKNSLERYYHYYERWATNQSSRQKALADLEQMQTVHLEKLSDLQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYIPEEEKAKREFFEYLQGEAEAGLERLHQCAEKELEVYLTEKDPEKDFNSFRTKLSGLTSVTRTFFENLVKALENGLSDVNSHAATSRTGSSKSLGRSSSGKKIEGGS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0165 539 CDD Rcat_RBR_ARI7-like 283 337 - -
Dere05g0165 539 FunFam RBR-type E3 ubiquitin transferase 261 511 - -
Dere05g0165 539 Pfam IBR domain, a half RING-finger domain 198 260 IPR002867 GO:0008270
Dere05g0165 539 Pfam IBR domain, a half RING-finger domain 277 325 IPR002867 GO:0008270
Dere05g0165 539 Gene3D - 256 511 - -
Dere05g0165 539 Pfam Ariadne domain 348 509 IPR045840 -
Dere05g0165 539 SMART ibrneu5 198 260 IPR002867 GO:0008270
Dere05g0165 539 SMART ibrneu5 264 334 IPR002867 GO:0008270
Dere05g0165 539 MobiDBLite consensus disorder prediction 1 34 - -
Dere05g0165 539 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 209 IPR013083 -
Dere05g0165 539 SUPERFAMILY RING/U-box 279 327 - -
Dere05g0165 539 SUPERFAMILY RING/U-box 198 267 - -
Dere05g0165 539 CDD BRcat_RBR_ANKIB1 206 269 - -
Dere05g0165 539 SUPERFAMILY RING/U-box 125 210 - -
Dere05g0165 539 ProSiteProfiles TRIAD supradomain profile. 125 338 IPR044066 -
Dere05g0165 539 FunFam RBR-type E3 ubiquitin transferase 123 212 - -
Dere05g0165 539 MobiDBLite consensus disorder prediction 1 43 - -
Dere05g0165 539 ProSiteProfiles Zinc finger RING-type profile. 129 173 IPR001841 -
Dere05g0165 539 MobiDBLite consensus disorder prediction 513 532 - -
Dere05g0165 539 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 44 426 IPR031127 GO:0004842|GO:0016567
Dere05g0165 539 MobiDBLite consensus disorder prediction 513 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0165 Dere-ChrDere05 2097044 2106447 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0165 1 532 ARIADNE family AT1G65430 71.429 0.0 791