Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0160 ATGGATATCCTCTCATCTTCACCCTATATTTCCAACCCCAATTGGCTCATTGAAGACAACATGAACATGAACACAAAATGGACTCCTGCTGAGAACAAACAGTTTGAAAATGCTCTTGCAATTTACGATAAGGACACGCCGGATCGGTGGGCGAAAGTGGCGGCAATGATACCGGGAAAGACAGTTGGGGATGTCATGAAGCAGTACAGAGAATTGGAAGAAGATATCAGTAATATAGAAGCTGGGTTGGTCCCAATTCCTGGCTATCATAGTACGACAACCTCACAGTTCACCTTAGACTGGGTTGACAGTGCTCCTGGGTATGATGGCTTTAAGGCACATGGTGGAAAGAGATCCTCATCAGGAAGACCTTCTGAGCAAGAAAGAAAGAAAGGAGTCCCTTGGACAGAAGAGGAGCATAAACTGTTTCTTCTTGGTCTGAAGAAGTATGGAAAAGGAGATTGGAGGAACATTTCGCGTAACTTCGTCGTGACGCGAACGCCAACACAGGTGGCTAGCCATGCTCAGAAGTACTTCATAAGGCAACTCTCAGGAGGGAAAGACAAGAGGAGAGCAAGCATCCATGACATAACAACTGTGAGTCTCTCAGAAACCACAAGAACACCATCTTCTGCTTTAGAAGACAACAATGGATGTAACCCAAAGCAGGAGCCTAATTCCTCTGCTGCTACAGCTCAAGCACATTTCCAATGGAATCAGCCAAATGCAGGAGGAGGAGGAGGAATAACTATGGGTTTTAATCCTTATGGCATTAACTCTTATGGGCTAAAAGTTCAGAGCCAAAACCTGCATCGAAGTGCTCTTCATGAGTCTTCTTACTTAGGGCCTCAAACTCAGAACATGGTTTTCCAAATGCATTCCACAAAACGCTTTTCACATGCTTGA 906 0.4481 MDILSSSPYISNPNWLIEDNMNMNTKWTPAENKQFENALAIYDKDTPDRWAKVAAMIPGKTVGDVMKQYRELEEDISNIEAGLVPIPGYHSTTTSQFTLDWVDSAPGYDGFKAHGGKRSSSGRPSEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVSLSETTRTPSSALEDNNGCNPKQEPNSSAATAQAHFQWNQPNAGGGGGITMGFNPYGINSYGLKVQSQNLHRSALHESSYLGPQTQNMVFQMHSTKRFSHA 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0160 301 Gene3D - 20 86 - -
Dere05g0160 301 CDD SANT 26 72 IPR001005 -
Dere05g0160 301 FunFam transcription factor MYB1R1 133 184 - -
Dere05g0160 301 MobiDBLite consensus disorder prediction 203 232 - -
Dere05g0160 301 FunFam Transcription factor SRM1 19 86 - -
Dere05g0160 301 CDD SANT 134 179 IPR001005 -
Dere05g0160 301 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 21 243 IPR043363 -
Dere05g0160 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 183 IPR017930 -
Dere05g0160 301 MobiDBLite consensus disorder prediction 119 134 - -
Dere05g0160 301 SUPERFAMILY Homeodomain-like 25 80 IPR009057 -
Dere05g0160 301 SUPERFAMILY Homeodomain-like 128 182 IPR009057 -
Dere05g0160 301 Pfam Myb-like DNA-binding domain 134 179 IPR001005 -
Dere05g0160 301 Pfam Myb-like DNA-binding domain 26 71 IPR001005 -
Dere05g0160 301 SMART sant 131 181 IPR001005 -
Dere05g0160 301 SMART sant 23 75 IPR001005 -
Dere05g0160 301 MobiDBLite consensus disorder prediction 112 134 - -
Dere05g0160 301 ProSiteProfiles Myb-like domain profile. 127 179 IPR001005 -
Dere05g0160 301 Gene3D - 133 183 - -
Dere05g0160 301 ProSiteProfiles SANT domain profile. 135 183 IPR017884 -
Dere05g0160 301 ProSiteProfiles SANT domain profile. 22 77 IPR017884 -
Dere05g0160 301 NCBIfam myb-like DNA-binding domain, SHAQKYF class 130 182 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0160 Dere-ChrDere05 2021192 2022332 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere05g0160 Myb_DNA-binding 1.4e-12 CL0123