Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0142 ATGAATCCCTTAACCCTAGTGAAACGCATTCAGAATATCAATGCCAAAGAAGCTGCTCTCGGCATCGGCGAGGAAGCTTCATGGCACGCAAAATACAAAGATTCCGCTTATGTGTTTGTGGGTGGTATTCCCTTCGATCTAACCGAGGGTGATCTCCTCGCTGTTTTTGCTCAATATGGAGAGGTTGTTGATGTTAATCTTGTTAGGGACAAAGGTACTGGGAAATCAAAAGGTTTTGCATTTCTTGCATATGAAGATCAAAGAAGCACAAATCTTGCAGTAGATAATCTGAATGGGGCACAGATTTTAGGTAGAACCATGAGGGTTGATCATGTTACTAAATATAAAAAGAAGGAAGAAGAAGATGAAGAGACAGAGCGGCAGAAAAGGGAGGAACGTGGTGTTTGTCGGGCTTTCCAAAGAGGTGAATGTACTCGTGGAGCTAGCTGCAAATTTTCTCATGATGAACAAAGAGCTGCAAACACAGGTTGGGGGGCCCCTGAGGATGCTGGCTCAAAATGGGATCATGACAAATTTGATGGTCACAAAAAAGAGAAGAGATATGGTAACAATCAATCGAATCATATTCCAGAAAACAGAGACAGAGATTCACGCTCCAGAGCCCAGGGAAATGAGATGGGATTAGGCAACCAACCCAAGCGTAGGAGAGATGATGATGAATTTGATGGAAGAGAAAATCTTCATAGAAGAGAGGAGAAAATATCAAGAAGGCATGAATATGATGAATTTGCTTCTAGGTCAAGGGAAGATCGTGATAGAAGGGAAGATAAAAGACCAAGAAGGAAAGATGACGATGATATGGATCCTGAACTGAGAGATCATCGTAGAAGGGAAGACATGAGGTCAAGAAAGCCAGATGTTGACTTTGAACCAAAGTCTAGAGATTCTGATAGAAGGGAAGAAAAGAAGCACCAGAGGCAGGATGACGATGATTTTGGAAGTAGGTCGAGAGAAGATCATATTAGCAGGGAAGAAAGGAAATCAAGGCAGTACAAAGAATATGATTCTGCATCAAGATCAAGAGAAGATTATGGTAGGAAGCAAGAGAACAGATCATACAGAAATGATGCAGAAAGATCAGAGCCAAAAGTGAAATATGATTTTGACAGGAGAGAAGAAAAGAGATCAAGAAGGTAA 1158 0.4136 MNPLTLVKRIQNINAKEAALGIGEEASWHAKYKDSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTNLAVDNLNGAQILGRTMRVDHVTKYKKKEEEDEETERQKREERGVCRAFQRGECTRGASCKFSHDEQRAANTGWGAPEDAGSKWDHDKFDGHKKEKRYGNNQSNHIPENRDRDSRSRAQGNEMGLGNQPKRRRDDDEFDGRENLHRREEKISRRHEYDEFASRSREDRDRREDKRPRRKDDDDMDPELRDHRRREDMRSRKPDVDFEPKSRDSDRREEKKHQRQDDDDFGSRSREDHISREERKSRQYKEYDSASRSREDYGRKQENRSYRNDAERSEPKVKYDFDRREEKRSRR 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0142 385 Gene3D - 11 127 IPR012677 -
Dere05g0142 385 CDD RRM_ist3_like 27 112 IPR045844 GO:0000398|GO:0003723
Dere05g0142 385 Gene3D - 128 205 - -
Dere05g0142 385 MobiDBLite consensus disorder prediction 217 385 - -
Dere05g0142 385 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Dere05g0142 385 FunFam Uncharacterized protein 127 205 - -
Dere05g0142 385 SUPERFAMILY RNA-binding domain, RBD 28 116 IPR035979 GO:0003676
Dere05g0142 385 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Dere05g0142 385 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Dere05g0142 385 SMART rrm1_1 37 110 IPR000504 GO:0003723
Dere05g0142 385 FunFam Zinc finger CCCH domain-containing protein 25 26 130 - -
Dere05g0142 385 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
Dere05g0142 385 MobiDBLite consensus disorder prediction 170 208 - -
Dere05g0142 385 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 268 - -
Dere05g0142 385 SUPERFAMILY CCCH zinc finger 132 155 IPR036855 GO:0046872
Dere05g0142 385 MobiDBLite consensus disorder prediction 161 385 - -
Dere05g0142 385 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0142 Dere-ChrDere05 1865944 1869962 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0142 38 109 Eukaryotic Initiation Factors Gene Family AT3G16380 34.722 2.18e-06 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g0142 05 1865944 1869962 Dere05g0142 05 1865944 1869962 ECH