Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0108 ATGTCTTGCTCCGTCGCCCTCTCCAATTCGCCGGTGTTCTCTCCGTCGTCTTCCCTCTTCTGCAACAAACCCTCCATCATCTCTTCCTCCCCTGAATCACTTCCCCTATCTTTGTCCCACCTCAAGCCACATCCTTCCACTTCGGCTTCCGCGTCCGCTTGTTCTTCTCCGTCTTCGCCTTCCTCTCCTTTTCGGCTTCGGCTCCACAAGCCTCCTACTGGACTTTCGAATTCGGCTTCGGCTTCAGCTCCTTCTTCGTCCACATCGCCGAACAGCACCGTTTTGAAGAGGAAGAGACCCGCCAGGCTTGATATTCCCATTTCGTCTCTGACTTTTGGGGTTCCGGCGACGCCGTCTTCGGTGGCTAGAGATGTTGTAGATGTGGAGGGTCATGGGTTTTCGGTGTATTGTAAAAGAGGGAGGAGAGAGTACATGGAAGATCGTTATTCTACTGCTGTCAATCTTCATGGACAACCCAAACAGGCTTTCTTCGGCATATTTGATGGGCATGGAGGTTCAAAAGCTGCTGAATTTGCTGCACATAACTTAGGAAAGAATGTCATGGATGAAGTGATCAGAAGAGATGAAGATGATATAGAAGAGGCAGTGAAGCATGGTTACCTGAATACAGATTCTGATTTCTTGAAAGAGGATCTCCATGGTGGCTCTTGCTGTGTAACAGCACTGATCAGGAATGGCAACCTTGTTGTTTCCAATGCTGGTGATTGCCGTGCTGTCATTAGCCGACAAGGGGTTGCAGAAGCCCTCACATCTGATCACCGTCCCTCAAGAGAAGATGAAAGGGACAGAATTGAGACTATGGGTGGCTATGTTGATTTATGCCATGGGGTATGGAGAATCCAGGGATCTCTGGCTGTTTCTAGAGGAATTGGAGATAGGCATTTGAAGCAATGGGTGATAGCTGAACCTGAGACTAAAATTCTCAGAATTGAACCTGAACATGAGTTCTTGATATTAGCTTCAGATGGATTATGGGATAAGGTTTCTAATCAAGAAGCTGTGGATATTGCTCGTCCTCTTTGCACTGGGGGTGATAAACCACAACCATTGGTGGCCTGCAAAAAGCTTGTAGATTTGTCTGTTTCGCGAGGCTCTTGTGATGACATAAGTGTTATGATAGTGAAATTGGAGCATTTTTTTTTTTAA 1167 0.4696 MSCSVALSNSPVFSPSSSLFCNKPSIISSSPESLPLSLSHLKPHPSTSASASACSSPSSPSSPFRLRLHKPPTGLSNSASASAPSSSTSPNSTVLKRKRPARLDIPISSLTFGVPATPSSVARDVVDVEGHGFSVYCKRGRREYMEDRYSTAVNLHGQPKQAFFGIFDGHGGSKAAEFAAHNLGKNVMDEVIRRDEDDIEEAVKHGYLNTDSDFLKEDLHGGSCCVTALIRNGNLVVSNAGDCRAVISRQGVAEALTSDHRPSREDERDRIETMGGYVDLCHGVWRIQGSLAVSRGIGDRHLKQWVIAEPETKILRIEPEHEFLILASDGLWDKVSNQEAVDIARPLCTGGDKPQPLVACKKLVDLSVSRGSCDDISVMIVKLEHFFF 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0108 388 MobiDBLite consensus disorder prediction 31 100 - -
Dere05g0108 388 MobiDBLite consensus disorder prediction 31 63 - -
Dere05g0108 388 FunFam probable protein phosphatase 2C 25 125 386 - -
Dere05g0108 388 SMART PP2C_SIG_2 148 383 IPR001932 -
Dere05g0108 388 SUPERFAMILY PP2C-like 132 384 IPR036457 -
Dere05g0108 388 ProSitePatterns PPM-type phosphatase domain signature. 163 171 IPR000222 GO:0043169
Dere05g0108 388 PANTHER PROTEIN PHOSPHATASE 2C 85 382 IPR015655 GO:0004722|GO:0006470
Dere05g0108 388 CDD PP2Cc 132 383 IPR001932 -
Dere05g0108 388 ProSiteProfiles PPM-type phosphatase domain profile. 132 383 IPR001932 -
Dere05g0108 388 SMART PP2C_4 118 381 IPR001932 -
Dere05g0108 388 Gene3D - 131 386 IPR036457 -
Dere05g0108 388 Pfam Protein phosphatase 2C 134 376 IPR001932 -
Dere05g0108 388 MobiDBLite consensus disorder prediction 73 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0108 Dere-ChrDere05 1478704 1480807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0108 1 387 PP2C-type Phosphatase Gene Family AT2G30020 67.588 1.11e-179 503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1865 04 21386341 21388058 Dere05g0108 05 1478704 1480807 CCT
Dere05g0108 05 1478704 1480807 Dere05g0108 05 1478704 1480807 ECH
Dere04g1865 04 21386341 21388058 Dere05g0108 05 1478704 1480807 ECH