Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0105 ATGTCGGCATGTCGCTATTCTTGGATGTTTTGTCCTTTACCTCGAAGTGACCAGGATGGTACTTGTCGAAGAGGATTCGGTGGTGGTGTATACCTCCAACGTTACCTCGATCTCCCGGGTTGGTGCTTACCAATACAACCATGGCCAGAGCTCACATGCACAGAAGGCCTTAACCCTCCTGTGCATGGGAGCGCTCCTCTGGGTCATCCTTTTCCACTTTAAGGACAAGTTGCAATGGCATTACGTCTCCAAGATGGACGAACGTTGATTGGCTTCTTGGGAAGAAACTTCACAGGACACTTTAGGGGATATTCATTTACAATGAGAAACCCGTGGAATCTAAAGACAAGAGAAGCTGGTCATCCAGTAACCGCCAAAATGGTGAAATTTCCCATGAAGATACCTCAGACCAATCCACAAAATGCTTTCATAATAGTAAGCCTTAAACCTCGTGAACTGTCTCATAGGACAAACCAGAAAACTATAGCCCTAATGGCCTCTGAAGATGATCACTTACATATCTTTCAATGGCATTTCATTCAAATAAACCACTCAAATTTTCACTCCTATAGCCATGGCATACTCTTTCTGCTTTTCTTCTTTGCCCTTCTCATTCTGATCGCCACGTTCTTCCTCCTTGCCCACTCCTGTCGTCGGCGCTGCCTTGCGGTCTCTCCGGCACCGCCGGCCACTACTCTTCAGTGGGTTAAGTTTGAGAAGGGGTCACTGGAACATAAGAGTGTAGGTGATTCAAATTTGGAATGCTGCATATGTTTGAGTGTATTCCAAGAGGGTGAGAAGGTGAAGGTGTTACCAGAATGTGAGCATGCCTATCATTTAGAGTGTGTTGAGAGATGGCTAAGTTCTAACCCTAGTTGCCCTCTTTGCAGGGCTTCACTCCACAAATTTATGTGTAATGCTACCACCAATATATAA 936 0.4541 MSACRYSWMFCPLPRSDQDGTCRRGFGGGVYLQRYLDLPGWCLPIQPWPELTCTEGLNPPVHGSAPLGHPFPLXGQVAMALRLQDGRTLIGFLGRNFTGHFRGYSFTMRNPWNLKTREAGHPVTAKMVKFPMKIPQTNPQNAFIIVSLKPRELSHRTNQKTIALMASEDDHLHIFQWHFIQINHSNFHSYSHGILFLLFFFALLILIATFFLLAHSCRRRCLAVSPAPPATTLQWVKFEKGSLEHKSVGDSNLECCICLSVFQEGEKVKVLPECEHAYHLECVERWLSSNPSCPLCRASLHKFMCNATTNI 311
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0105 311 ProSiteProfiles Zinc finger RING-type profile. 255 297 IPR001841 -
Dere05g0105 311 PANTHER RING-H2 FINGER PROTEIN ATL16 236 301 IPR044600 GO:0016567|GO:0016740
Dere05g0105 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 303 IPR013083 -
Dere05g0105 311 SMART ring_2 255 296 IPR001841 -
Dere05g0105 311 Pfam Ring finger domain 254 297 IPR001841 -
Dere05g0105 311 CDD RING-H2_EL5-like 254 297 - -
Dere05g0105 311 SUPERFAMILY RING/U-box 249 303 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere05g0105 Dere-ChrDere05 1419583 1423612 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0105 174 300 C3H Transcription Factor Family AT3G11110 33.566 1.16e-16 74.3