Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0101 ATGGGGTATAATTTTGATACCCGGAAAATCAGAAACATATGTATTTTGGCACATGTTGATCATGGTAAGACTACACTGGCTGATCATCTAATTGCGGCTTCTGGGGGTGGCCTACTTCACCCAAAGTTGGCTGGACGCATTAGGTTCATGGATTATCTTGATGAGGAGCAAAGGAGGGCTATCACTATGAAGAGCTCTTCCATTGCTCTTCAATATAAAGATTACTCTATAAACCTCATAGATTCCCCTGGTCACATGGACTTCTGTAGTGAGGTGTCCACGGCTGCAAGATTAAGTGATGGTGCCTTGATTTTGGTTGACGCTGTTGAAGGCGTGCATATCCAAACCCATGCAGTGTTGCGGCAATGTTGGATTGAGAAGCTCTCGCCATGCTTGGTTCTTAACAAGATTGACAGACTGATTAGTGAATTGAAGTTGAGTCCCATGGAAGCCTATACTCGGTTATTAAGAATTGTGCACGAGGTCAATGGGATAGTCAGTGCATATCAATCTGAGAAGTATTTGTCAGATGTAGATTCCATACTTGCAGGACCTTCAGGTGATATGATTGGTGATGAAAGCAGTGAGCTCATAGAGGAGGATGATGAAGATATGTTTCAACCACAGAAAGGGAATGTGGCATTTGTGTGTGCGCTAGATGGTTGGGGGTTTGGAATTCATGAATTTGCTGAATTTTATGCTTCAAAACTTGGCGCTAGTGCTGCTGCATTGCAGAAAGCCTTATGGGGTCCTCGGTATTTCAATTCAAAGACTAAAATGATTGTTGGTAAGAAAGGCATAGGCGGAGGAAGTAAGGCTAGGCCAATGTTTGTGCAATTTGTTCTTGAACCACTATGGCAGGTATACCAGGGAGCTCTAGAGGCTGATGGGGACAAAGGTGTGCTTGAGAAAGTTATTAAGTCATTCAATTTGTCTGTACCGTCTCGTGAACTTCTAAATAAAGACCCCAAAGTCGTGCTTCAAGCTGTTATGAGCCGGTGGCTTCCTCTGTCAGATACAATCTTATCCATGGTTGTTAAGTGTATGCCGGATCCAATATCTGCACAATCATTTCGTATATCACGTCTTCTTCCAAAGAGAGAGGTTCTTGATGATGGGGTTGATAAGAATGTGCTTACAGCGGCAGAGCTTGTGAGAAAATCAGTAGAGGCATGTGATTTGAGACCTGAAGCCCCATGTGTTGCATTTGTCTCAAAAATGTTTGCTGTCCCAGTTAAAATGCTTCCCCATCGGGGCTCACATGGGGAAATCTTGAACTATTCTGGCGATGAAGGAGAGGGTGAGTCAGATGAATGTTTCTTGGCATTTGCTAGGATATTTAGTGGAGTTTTGTCGGCAGGACAGAGGGTTTTTGTGCTTTCAGCTTTGTATGATCCACTAAAAGGGGAACAAACACTAAAGCATGTGCAGGAGGCAGAATTGCAATCCCTGTATCTTATGATGGGCCAAGGTTTGAAAGTAGTGACATCTGCAAAAGCTGGAAATATTGTTGCTATACGGGGCCTTGGCCAACATATCCTGAAAAGTGCTACACTCTCATCTAGTAGGAATAGTTGGCCCTTCTCTAGTATGGCTTTCCAGGTTGCCCCAACTCTGAGAGTTGCAATTGAGCCATCTGACCCTGCAGATATGGTTGCACTATTGAAAGGCTTGAGGCTTCTTAATCGAGCAGACCCATTTGTTGAGGTCACCGTTTCTGCGAGAGGAGAGCATGTCCTAGCTGCAGCAGGAGAAGTTCATCTTGAAAGATGTGTAAAAGATTTAAAGGAGAGATTTGCAAAGGTAAGCTTGGAAGTCTCTCCACCTCTTGTCTCTTACAAGGAGACCATTGAAGGAGAAGTGTCCAACATGCTGGAAAATTTGAAAGCTTTCAGTAAGCGCTCTGATTATGTTGAAAAAACAACACCAAATGGAAGATGTGTTGTACGTGTGCATGTGATGAAACTTCCATCTTCTCTAACAAAGGTGCTTGATGATAGTTCTGATATACTTGGAGATGCCATTGGAATAAAATCAGGGCAGACCATCAAAAGTTTGGATACACAGAGATCAAGTATTCTTGAAAATGATAATCCAACTGAAGTACTAAAAAAACGCATTATGGATTCATTGGAAAGTGAGATTTTGAGCCTGAATGAGAATGACAAGGATTATGCTGACAGATGTAAGGTGAAGTGGCTAAAGCTCTTGAGGAGGATTTGGGCACTTGGACCTAGGCAAATTGGTCCCAACATGCTCGTTACTCCTGATGTCAAAGCTGAGAGTACTGATAGCTTTGTTCTAATACGTGGTCACTCTCATGTATCTGAAAGGTTGGGTTTTGCTGATGATTCTGGTACTTGTAATACAGTAGCTGAGACATCTTCAAATTTGAATGAAGCATTAAACATGGATGCCGAGCGTCTTGAGAGTAGTGTCATATCTGGGTTTCAACTGGCCACTGCAGCTGGACCCTTATGTGATGAACCTATGTGGGGTTTGGCATTTGTCATTGAGGCATATATTTCTCCCTACATAGGGCAGTATGAAGAATCTGAAACACACCAACAATCTGAGCAGTATGGCGTCTTTGCAGGACAGGTGATCACAACTGTTAAAGATGCTTGTAGAGCAGCTGTGCTTCAGAATAGGCCACGGCTTGTGGAAGCCATGTACTTTTGTGAGTTGAATACCCCTACTGAATATTTGGGTCCCATGTATGCTGTACTTGCCAGAAGACGGGCCCGAGTTTTGAAGGAAGAGATGCAGGAAGGTTCTCCTTTCTTCACCGTGCATGCCTATGTGCCTGTCTCTGAAAGCTTTGGTTTTGCTGATGAACTTAGGAGGTGGACTTCTGGGGCTGCTAGCGCACTTCTTGTCCTTAGCCACTGGGAAGCACTTTCTGAGGATCCTTTCTTTGTACCTAAAACTGAAGAGGAAATTGAAGAGTTTGGAGATGGCTCTAGTGTGCTTCCGAATACAGCAAGAAAGTTAATTGATGCAGTCAGACGCCGTAAGGGTCTTCCAGTGGAGGAAAAAGTAGTACAGCATGGAACAAAGCAAAGGACACTAGCTCGCAAAGTCTGA 3087 0.436 MGYNFDTRKIRNICILAHVDHGKTTLADHLIAASGGGLLHPKLAGRIRFMDYLDEEQRRAITMKSSSIALQYKDYSINLIDSPGHMDFCSEVSTAARLSDGALILVDAVEGVHIQTHAVLRQCWIEKLSPCLVLNKIDRLISELKLSPMEAYTRLLRIVHEVNGIVSAYQSEKYLSDVDSILAGPSGDMIGDESSELIEEDDEDMFQPQKGNVAFVCALDGWGFGIHEFAEFYASKLGASAAALQKALWGPRYFNSKTKMIVGKKGIGGGSKARPMFVQFVLEPLWQVYQGALEADGDKGVLEKVIKSFNLSVPSRELLNKDPKVVLQAVMSRWLPLSDTILSMVVKCMPDPISAQSFRISRLLPKREVLDDGVDKNVLTAAELVRKSVEACDLRPEAPCVAFVSKMFAVPVKMLPHRGSHGEILNYSGDEGEGESDECFLAFARIFSGVLSAGQRVFVLSALYDPLKGEQTLKHVQEAELQSLYLMMGQGLKVVTSAKAGNIVAIRGLGQHILKSATLSSSRNSWPFSSMAFQVAPTLRVAIEPSDPADMVALLKGLRLLNRADPFVEVTVSARGEHVLAAAGEVHLERCVKDLKERFAKVSLEVSPPLVSYKETIEGEVSNMLENLKAFSKRSDYVEKTTPNGRCVVRVHVMKLPSSLTKVLDDSSDILGDAIGIKSGQTIKSLDTQRSSILENDNPTEVLKKRIMDSLESEILSLNENDKDYADRCKVKWLKLLRRIWALGPRQIGPNMLVTPDVKAESTDSFVLIRGHSHVSERLGFADDSGTCNTVAETSSNLNEALNMDAERLESSVISGFQLATAAGPLCDEPMWGLAFVIEAYISPYIGQYEESETHQQSEQYGVFAGQVITTVKDACRAAVLQNRPRLVEAMYFCELNTPTEYLGPMYAVLARRRARVLKEEMQEGSPFFTVHAYVPVSESFGFADELRRWTSGAASALLVLSHWEALSEDPFFVPKTEEEIEEFGDGSSVLPNTARKLIDAVRRRKGLPVEEKVVQHGTKQRTLARKV 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0101 1028 CDD EF2 11 234 - -
Dere05g0101 1028 SUPERFAMILY EF-G C-terminal domain-like 889 987 IPR035647 -
Dere05g0101 1028 Pfam Elongation factor Tu domain 2 441 519 IPR004161 GO:0005525
Dere05g0101 1028 Gene3D Elongation Factor G (Translational Gtpase), domain 3 536 612 - -
Dere05g0101 1028 Gene3D - 632 883 IPR014721 -
Dere05g0101 1028 Pfam Elongation Factor G, domain III 537 604 IPR041095 -
Dere05g0101 1028 SUPERFAMILY Ribosomal protein S5 domain 2-like 611 888 IPR020568 -
Dere05g0101 1028 Coils Coil 708 728 - -
Dere05g0101 1028 NCBIfam small GTP-binding protein domain 9 140 IPR005225 GO:0005525
Dere05g0101 1028 FunFam Elongation factor like GTPase 1 226 335 - -
Dere05g0101 1028 Gene3D - 2 207 IPR027417 -
Dere05g0101 1028 FunFam Translation elongation factor 2 536 612 - -
Dere05g0101 1028 CDD EF2_snRNP_III 537 608 - -
Dere05g0101 1028 Gene3D Translation factors 352 534 - -
Dere05g0101 1028 CDD EF2_II 399 522 - -
Dere05g0101 1028 CDD eEF2_snRNP_like_C 889 967 - -
Dere05g0101 1028 FunFam Elongation factor like GTPase 1 885 1020 - -
Dere05g0101 1028 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 350 IPR027417 -
Dere05g0101 1028 Gene3D - 885 1019 - -
Dere05g0101 1028 SUPERFAMILY EF-G C-terminal domain-like 535 609 IPR035647 -
Dere05g0101 1028 Pfam Elongation factor Tu GTP binding domain 9 349 IPR000795 GO:0003924|GO:0005525
Dere05g0101 1028 FunFam Elongation factor 2-like protein 2 214 - -
Dere05g0101 1028 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 7 1027 - -
Dere05g0101 1028 Gene3D Yeast translation eEF2 (G' domain) 226 335 - -
Dere05g0101 1028 SUPERFAMILY Translation proteins 390 531 IPR009000 -
Dere05g0101 1028 CDD aeEF2_snRNP_like_IV 608 893 - -
Dere05g0101 1028 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 8 242 IPR000795 GO:0003924|GO:0005525
Dere05g0101 1028 Pfam Elongation factor G C-terminus 887 971 IPR000640 -
Dere05g0101 1028 SMART EFG_C_a 886 975 IPR000640 -
Dere05g0101 1028 FunFam Elongation factor Tu family protein 352 534 - -
Dere05g0101 1028 PRINTS GTP-binding elongation factor signature 94 105 IPR000795 GO:0003924|GO:0005525
Dere05g0101 1028 PRINTS GTP-binding elongation factor signature 12 25 IPR000795 GO:0003924|GO:0005525
Dere05g0101 1028 PRINTS GTP-binding elongation factor signature 58 66 IPR000795 GO:0003924|GO:0005525
Dere05g0101 1028 PRINTS GTP-binding elongation factor signature 78 88 IPR000795 GO:0003924|GO:0005525
Dere05g0101 1028 PRINTS GTP-binding elongation factor signature 130 139 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0101 Dere-ChrDere05 1342871 1345957 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0101 8 1028 Eukaryotic Initiation Factors Gene Family AT3G22980 73.340 0.0 1534