LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere05g0097	ATGGAAGGCGTGAGAAGCACAAAACCCTCGCACTCTAGCATCAAGACAGGCTGTGATGAAATGGAAGGCGTGTGTGGCAGCACCGGTGGTGAAATGGGAGGCCAATCATCATCATCGTCATCATCATCTAAGCCTCCTTCGATTGCAACTTCACCAGTTCGTTTACACCAGAAACAACCTCAGCCTCATGATCCTCATTCTCCTGATACTGTTCATGCTATTGCTAACACAGAGCAAGACATGAAGCAACAGCATCAAGCAACAACCTCAGACCCCAAAACTGAAGAAGTACGACGACTACCACCTTCGGATCCCAGAAGGCTGAAGCGAGCGGTGTCAAATCGGATGTCTGCTCAGAAATCCAGATTGAGGAAGTTTCAATATGTGACTAGTTTGGAGAGGCAAAGCGGAGAATTAGAGAATCAGATAGCTTTTCTTAAGCCACAAGTTGCAACCTATTCCAATAACAAACAGCTATTGATGATGGAGCAAATGGTCTTGAGGCAAAAACTCGCGGCCCTTGAAATGGAAATCACCGTGAAACAAGTTGAAATTGAAAGGAACCAAGCAGAAGTGCATATGCTGAGGGAAGTAGAGAAGCGACAGAAGGAAGAAGCTCGAGCAATGATGGCTCACTTTAATTGGGACGCTGCTTCCGGAAATCAATTTGTCCCTGAACAAATGGCTTATACAGATGTTCCAGCTCAAGTGTTTGGAGGTTCTGAAAACAATGAAGAAGGAACATCAGGAATGAAAGTGGATGAGCAAACAAGGGATTCCTTCTACCGTGCTGGCTCAGTGAGTGAGTTGGACGCCATTGTTAACCCTCCAAAGCAAAGCGACAAGGAGTCCGACCCTGTGTTTTATTTTGGCTTTTAG	879	0.4573	MEGVRSTKPSHSSIKTGCDEMEGVCGSTGGEMGGQSSSSSSSSKPPSIATSPVRLHQKQPQPHDPHSPDTVHAIANTEQDMKQQHQATTSDPKTEEVRRLPPSDPRRLKRAVSNRMSAQKSRLRKFQYVTSLERQSGELENQIAFLKPQVATYSNNKQLLMMEQMVLRQKLAALEMEITVKQVEIERNQAEVHMLREVEKRQKEEARAMMAHFNWDAASGNQFVPEQMAYTDVPAQVFGGSENNEEGTSGMKVDEQTRDSFYRAGSVSELDAIVNPPKQSDKESDPVFYFGF	292

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere05g0097	292	MobiDBLite	consensus disorder prediction	30	57	-	-
	Dere05g0097	292	Gene3D	-	106	158	-	-
	Dere05g0097	292	Pfam	bZIP transcription factor	106	161	IPR004827	GO:0003700\|GO:0006355
	Dere05g0097	292	Coils	Coil	171	191	-	-
	Dere05g0097	292	SMART	brlzneu	102	166	IPR004827	GO:0003700\|GO:0006355
	Dere05g0097	292	PANTHER	BASIC LEUCINE ZIPPER 34	34	221	-	-
	Dere05g0097	292	MobiDBLite	consensus disorder prediction	1	117	-	-
	Dere05g0097	292	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	104	160	IPR004827	GO:0003700\|GO:0006355
	Dere05g0097	292	CDD	bZIP_plant_RF2	107	158	IPR044759	GO:0003700\|GO:0006355
	Dere05g0097	292	MobiDBLite	consensus disorder prediction	72	88	-	-
	Dere05g0097	292	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	109	124	IPR004827	GO:0003700\|GO:0006355
	Dere05g0097	292	SUPERFAMILY	Leucine zipper domain	106	161	IPR046347	GO:0003700\|GO:0006355
	Dere05g0097	292	MobiDBLite	consensus disorder prediction	89	111	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere05g0097	Dere-ChrDere05	1283388	1285024	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere05g0097	104	181	bZIP Transcription Factor Family	AT3G58120	39.744	5.63e-15	71.6

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Dere05g0097		bZIP_1	1.5e-09	CL0018