Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0075 ATGGGGGGTTCTTCTCCTTGTGCCTCCTGCAAGTTATTACGACGTCGTTGCACCAAGGAGTGCATATTTGCTCCTTACTTTCCTTCTGATGATCCTCACAAGTTCGCCATTGTCCACAAGGTCTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAGCTTCCAGTGCATCAAAGAGCAGATGCAGTGAGTAGTTTGGTTTACGAGGCAAACGCTAGAGTGAGAGATCCAGTGTATGGATGTGTAGGAGCTATATCGTACCTGCAAAGCCAAGTCTCACAATTGAAAATGCAGCTTTCAGTGGCTCAAGCAGAGATTCTGTGCATCCAGATGCAGCAAGAGTCGACCAACTTCCCAACCCAGATGGATCACTACCAAGATGACAAATCGCTTATCCTATCTGATAATAACTACGAAAGCAACATTACTATTCCTCCTCAGTACCTAGGATTTGCTTCATCTGCTGCTTCCTCATCTAGCAATGTACTCCAAGACCCTCATAAGAGAGAGCCGTTTTGGACTTAA 525 0.4552 MGGSSPCASCKLLRRRCTKECIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQSQVSQLKMQLSVAQAEILCIQMQQESTNFPTQMDHYQDDKSLILSDNNYESNITIPPQYLGFASSAASSSSNVLQDPHKREPFWT 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0075 174 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Dere05g0075 174 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Dere05g0075 174 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0075 Dere-ChrDere05 902238 902913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0075 3 174 AS2 family AT2G30130 64.767 3.14e-77 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dere05g0075 LOB 1.2e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere05g0075 05 902238 902913 Dere05g0075 05 902238 902913 ECH