Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0059 ATGCTCGTTCGTATTCTGAATTGGCAAAATCAGTGCATGTTATGGAGATCTGTAGGGTCTTTGTCAAACGTAGTTGGCCTGCTTTGTTATGCGCTGAGCTCCTCTTTCGAACGTCTCTTTGGGGAATGGAACCTTGCCAAGATCATCCTTTATACCACTATAAGTGTAGTAAGTAGCAGCATCGTGTTATTTGCAGAGAAAAGGCAAGTTTCAAAGAGCTTCATGCTAAGAGCTCATGTAGGGTTTTTGGTTTTAATCATAACCTCTCTGTACTCCTTTTTCTACGATAAAGCTCTGAATGGAAAACCAGACGTACTAAGCATCATTTCCTGGGCTGCTTTTGCTTTGTCGTCACTATGTTTGTCACAACTGATTGAGCTTGGATTGGAAGTGGATCTCTTCAATTTTTTCCTAGGATTTCTTACTGTGGAATTGATGAAGATCAGCTTGATTATGGCTTTCGTTGCGGCTGGTGTCTGCTATCCGCTCATCACTCGGCATTGCCTAAGTGATGGACAATTTCTAGGGGAGAGCAATTCTGGGGACAATCAGCAAAATATTGAAGAAAACGACATTGGCTATGCTCAAGATATGGGCAACAGGGAGATTCAATCTCATCCAGGCCAACTAGTGATCGGAGCCACCAGTAACGAAGACCATGTTGCCATTGCAATTGATTCCGCAAATGCTGTGGAAACAACACTTGAAAATGAAGGCGTCAGTGAAGAGACTCAAGGATACCCGAGGGAAAGCGGTCCTGGGGACAATCAACAAATTATAGAAGACAAAAACTTGTGGAGTTTCTCTATCCCATCTGAACCCACAAACCAAGATAATGAAAACGTTTGGATGCAAAGCTTTTCCCAAGGCGAAGAGAGACGTGGACTCTATAAGATAAGAAGAAGAACTTTAAAAAACTTGGAGGTGTCCGAAGTTCCAAGGGACGATGGCTATGCATGGAGAAAGTATGGGCAGAAGGAGATACTGGGAGCCCAACACCCAAGGAGCTACTTCAGGTGCACTCACAAATATGGTCTGGGCTGCGAGGCAACCAAACAGAATAGTATATACGCAACAAGTGGATCAACAGGTAGCAAAGTGAAGGTGAAGCCATTGAGTTTTCTAGACAAGGTCTGTTGGAAGATGAACAATGAGTTGTTTGAAGATAGCATAAAGCTGTATAGAGCTTTCTCAAGTTGGCACCAATGA 1209 0.4326 MLVRILNWQNQCMLWRSVGSLSNVVGLLCYALSSSFERLFGEWNLAKIILYTTISVVSSSIVLFAEKRQVSKSFMLRAHVGFLVLIITSLYSFFYDKALNGKPDVLSIISWAAFALSSLCLSQLIELGLEVDLFNFFLGFLTVELMKISLIMAFVAAGVCYPLITRHCLSDGQFLGESNSGDNQQNIEENDIGYAQDMGNREIQSHPGQLVIGATSNEDHVAIAIDSANAVETTLENEGVSEETQGYPRESGPGDNQQIIEDKNLWSFSIPSEPTNQDNENVWMQSFSQGEERRGLYKIRRRTLKNLEVSEVPRDDGYAWRKYGQKEILGAQHPRSYFRCTHKYGLGCEATKQNSIYATSGSTGSKVKVKPLSFLDKVCWKMNNELFEDSIKLYRAFSSWHQ 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0059 402 Pfam WRKY DNA -binding domain 315 353 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere05g0059 402 Gene3D WRKY domain 300 362 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere05g0059 402 MobiDBLite consensus disorder prediction 235 257 - -
Dere05g0059 402 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 227 353 IPR044810 GO:0003700
Dere05g0059 402 SMART WRKY_cls 314 371 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere05g0059 402 SUPERFAMILY WRKY DNA-binding domain 311 358 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere05g0059 402 ProSiteProfiles WRKY domain profile. 309 353 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0059 Dere-ChrDere05 768278 770608 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0059 293 353 WRKY Transcription Factor Family AT3G56400 55.738 2.15e-17 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Dere05g0059 WRKY 9e-17 CL0274