Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0050 ATGGCCGCTTCCAATGGTGGCTTAGACTCCTCTGTAAGCTCTTACCCGACCTTCACTTTCTCGACATACCCATTCACCAACACTTGCTTCGATGACAACCCCGGCGAGCTTCCTGGGTTTTCTGATCCTGTAGATGAGAGAGCCAGGTCGGGTTTGCCCAAATTCAAGTCCATATCACCTCCATCTCTGCCTCTTTCTCCTTCTTCTTATTTTGCTATCCCTCGGGGGTTGAGCCCTGCTCACCTTCTCGACTCACCGGTTCTTCTTAACGCTTCTAACAGTTTGCCATCTCCGACAACTGGAGCACTTGCCTATAATTGGAAGAGCGATTCTGGGGAATATCAGCAAAATATCGAGGAACATGACAGAAACTTGTCGGGTTTATCCTTCCAACCCCAATTAAGGCCTCATCGTCCATCATCCACAACCATGTTTCATTCTTCAGCTACCTCACTCCAATCGCAACAGCCGTGGACGATTGAAGAAGCTGAAAATGGAGATAGTTTTTCTACAGGTAAGAGTATGGTGGTTAAAACTGAGAACACTTCGATGCAGAGCTTCTCCCCTGAGATGTCGTATGGGTTTCATTCCGCGAATCATAGCAATTTCCTCCCACATACACAATCCCAGACCTTAAGCAGAAGATCAGATGACGGGTACAATTGGAGAAAATATGGGCAGAAACAAGTGAAAGGAAGTGAGAATCCTAGAAGTTACTACAAATGCACATACCCCAGTTGTCCAACAAAGAAGAAGGTAGAGAGGTCTCCAGTAGATGGGCAAATTACTGAGATAGTTTATAAGGGTACCCATAACCATCTCAAGCCTCAGTCTAATAGGAGAAACTCTTCATCTTCATCTTTGCTTGCAATTCCTGCTTCAAATCCTGTAAACGCAGAGATCCCAGATCAATCATTAGCCAACCACATCAGTGGACAAATGGTTTCGGTTGCAACACCAGATAACTCTTTAATTTCAATGGGAGATGATGATTTTGAGCTGAGTAAATCAGGAGGCGTAGATTCTTTTGATTATGATGGACCAGATACCAAAAGATGGCAAGTCCTTTTTACTGTTCACTTTTAA 1086 0.4438 MAASNGGLDSSVSSYPTFTFSTYPFTNTCFDDNPGELPGFSDPVDERARSGLPKFKSISPPSLPLSPSSYFAIPRGLSPAHLLDSPVLLNASNSLPSPTTGALAYNWKSDSGEYQQNIEEHDRNLSGLSFQPQLRPHRPSSTTMFHSSATSLQSQQPWTIEEAENGDSFSTGKSMVVKTENTSMQSFSPEMSYGFHSANHSNFLPHTQSQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPSCPTKKKVERSPVDGQITEIVYKGTHNHLKPQSNRRNSSSSSLLAIPASNPVNAEIPDQSLANHISGQMVSVATPDNSLISMGDDDFELSKSGGVDSFDYDGPDTKRWQVLFTVHF 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0050 361 Gene3D WRKY domain 203 277 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere05g0050 361 MobiDBLite consensus disorder prediction 34 58 - -
Dere05g0050 361 SUPERFAMILY WRKY DNA-binding domain 215 276 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere05g0050 361 FunFam WRKY transcription factor 206 277 - -
Dere05g0050 361 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 84 304 IPR044810 GO:0003700
Dere05g0050 361 SMART WRKY_cls 216 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere05g0050 361 ProSiteProfiles WRKY domain profile. 217 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere05g0050 361 Pfam WRKY DNA -binding domain 217 273 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0050 Dere-ChrDere05 692979 694313 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0050 52 354 WRKY Transcription Factor Family AT2G38470 37.963 4.00e-36 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Dere05g0050 WRKY 1.1e-25 CL0274