Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0049 ATGCTGTCAGGGGACATACCTCCTAATCAGACTATATACATTAAAAATCTCAATGAGAAAGTCAAGAAAGAAGAACTAAAGAGATCACTGTATTGCTTATTCTCACAATATGGAAGGATTTTGGATGTTGTTGCTCTAAAGACACCCAAGCTTAGAGGGCAAGCATGGGTTTGCTTTAGTGAAGTAACTGCTGCCAGTAATGCAGTGCGACAAATGCAAAACTTTCCTTTCTATGACAAACCTATGCGCATTCAATATGCAAAGACCAAGTCAGATTGTATTGCTAAAGAGGAGGGAAGTTATGTTCCAAGGGAAAAGAAAAAAAAGCAAGAGGAAAAAGCTGAAAGAAAAAGACGCGCTGATGAAGCTCAGCAACCTGCTATGGCTAATAGTACACAAGGTGCAAATAATGGTCCAACGGCCTCATTCCGCCAAGGACCAGGTGCCCAAGAAGCAGCTCCTCCTAACAATATTTTGTTTATAGAGAATTTGCCCCATGAAACCACCAGCAGGATGCTTGAAATGCTTTTCCAACAATACCCAGGTTTTAAGGAAGTACGTTTGATTGAAGCAAAGCCAGGTATTGCGTTTGTAGACTTTGAAGATGAAGTGCAGTCCTCCATGGCCATGCAGGCTCTTCAGGGCTTCAAAATCACCCCTCAGAATCCCATGATCATCACATTTGCGAAGAAGTAA 696 0.4181 MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCIAKEEGSYVPREKKKKQEEKAERKRRADEAQQPAMANSTQGANNGPTASFRQGPGAQEAAPPNNILFIENLPHETTSRMLEMLFQQYPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALQGFKITPQNPMIITFAKK 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0049 231 CDD RRM2_U1A_like 155 227 - -
Dere05g0049 231 SMART rrm1_1 158 227 IPR000504 GO:0003723
Dere05g0049 231 SMART rrm1_1 11 85 IPR000504 GO:0003723
Dere05g0049 231 MobiDBLite consensus disorder prediction 97 123 - -
Dere05g0049 231 FunFam U2 small nuclear ribonucleoprotein B'' 148 231 - -
Dere05g0049 231 FunFam U1 small nuclear ribonucleoprotein A 4 109 - -
Dere05g0049 231 CDD RRM1_U1A_like 11 88 - -
Dere05g0049 231 SUPERFAMILY RNA-binding domain, RBD 8 220 IPR035979 GO:0003676
Dere05g0049 231 MobiDBLite consensus disorder prediction 125 144 - -
Dere05g0049 231 Coils Coil 104 124 - -
Dere05g0049 231 Gene3D - 4 114 IPR012677 -
Dere05g0049 231 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 9 89 - -
Dere05g0049 231 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 218 IPR000504 GO:0003723
Dere05g0049 231 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 82 IPR000504 GO:0003723
Dere05g0049 231 MobiDBLite consensus disorder prediction 97 154 - -
Dere05g0049 231 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 89 IPR000504 GO:0003723
Dere05g0049 231 Gene3D - 148 231 IPR012677 -
Dere05g0049 231 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 231 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0049 Dere-ChrDere05 686657 689348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0049 3 231 Eukaryotic Initiation Factors Gene Family AT1G71770 21.702 1.06e-08 53.1