Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0040 ATGGTCAATTTGCATTTGCTTAATATAGATGATGTGGTGGTTATGCAAGTTCAATCCTTGATATCTAAGATTCAGATGTTGGCACTTAAGATTTTTGAGAAGCTAAAGGCTTCCCAACATTGTCTCCATGATGAATTTAGTTCTGCACATGTAGAGAGAATTAAGAATTTGGAACATAATGAAACATCATCAGGCATTAAGGAAGCTCTAAGGGAACAGAGTGCAAAACAAAGTGAAAAGACTGCAGAAGCTCATTATATCGATCGGATAATTGCTCTTGTAACTCGTATGTATGAGCGTCATGTTATGCTCAAGGAAGCCCAGAGCTGTAGCCCAGTTCTAGTACCTCCGGATTTTTATTGTCCTCTGCCTTTGGAGTTTACGACAGATCAAACACGTCTGACTCTGGCTCACACCAATCTAATACCTAACTACACTGTAAAGGCATTAAATGCAAACTGGTGCGAATTGAACAATGTCAAGCCGGTTGATCCTATAAAGTCTTCAAATTCAAAACAAGCATCTTCCCTTCAAGGGTATATGGATTCCAGTGCAACTAGGGATTTGCCTGTTTTAGGTCATTCCAGGGGCAACCAGCCATCCTCACCTGAGTCAGTTCATGGTTGTTCATTCAGTTCAACAGATAAGAACTTAACTTTTAGTGGAATCCCCCAAGAGGGATCATCTCCATTGCATCCCTGTCCAACTTCAGATGGTTCATTAAGTGGTATGTCTAATGGGCAGAGTTTGGATATTGGAAGAATATCGGAATCTTCCAATGCCTTCAGCTCAGAAGGATCTCAAATTCATGTTAGAACTGCTTCTGATTCCAGTGCAGTTCCAGTGAAAATTTGCCTCAAGGAACACAAGGTGATAGCGGCAATGCTTCTCAGGCATTGGGCAATTCAGGTTTGGACGTTGGTGGAAGACCGAAAGAGCTCATCGCTTGATGCTCAGAGGGACGCAACAGCAGAACTCCGCCATCTTGCTAAGCATAATATGGATAACCGAATTGTGATTGCAAACTATGGAGTCATTAGCTTATTAGTCGAACTACTCCAATCAACTGATACAAATGCAATTGCAAATGCTGGTGCAATTGATCCTCTGATTCATGTCCTTGAGACAGGAAGTACTGAAGCCAAGGAGAATTCAGCTGCCGCGCTTTACAGGTTATCAGTGATGGAAGAAAACAAGATCAGGATAGGGAGATCTGGGGCAATTAGGCCACTGGTTGATTTATTAGCAAATGGAACTCCAAATGGGAAAAAAGATGTTGCCACTGCTTTGTTTAATCTGCCAATATTCCATGAAAACAAGGGTCGGACAGTGCAGGCTGGTGCTGTGAGGCACCTTGTGGAGTTAATGGACCCAGCTGCTGGAATGCTTGACAAGGCAGTGGCTGTTTTGGCAAATCTTGCAACAGTCCTAGAAGGAAGAACTGCAATTGGTCAGGAAAGTGGAATTCCTATTCTGGTGGAGGTTGTTGAATTGGGTTCAGCTAGAGGAAAGGAAAATGCAGCTGCCGCTCTTCTACATCTTTACTCAAACAGTACCAGGTTTTTAAGCATTGTGCTCCAAGAAGGAGCTATCCCACCAATAGTAGCTTTGTCACACTCAGGCCCCCTAAGGGCCAATGAAAAGGCTCGAGCTCTGTTTAACCAATTTATATGTCAAAGACATGGTAGTGGCGGGAGGGGCTGA 1704 0.4319 MVNLHLLNIDDVVVMQVQSLISKIQMLALKIFEKLKASQHCLHDEFSSAHVERIKNLEHNETSSGIKEALREQSAKQSEKTAEAHYIDRIIALVTRMYERHVMLKEAQSCSPVLVPPDFYCPLPLEFTTDQTRLTLAHTNLIPNYTVKALNANWCELNNVKPVDPIKSSNSKQASSLQGYMDSSATRDLPVLGHSRGNQPSSPESVHGCSFSSTDKNLTFSGIPQEGSSPLHPCPTSDGSLSGMSNGQSLDIGRISESSNAFSSEGSQIHVRTASDSSAVPVKICLKEHKVIAAMLLRHWAIQVWTLVEDRKSSSLDAQRDATAELRHLAKHNMDNRIVIANYGVISLLVELLQSTDTNAIANAGAIDPLIHVLETGSTEAKENSAAALYRLSVMEENKIRIGRSGAIRPLVDLLANGTPNGKKDVATALFNLPIFHENKGRTVQAGAVRHLVELMDPAAGMLDKAVAVLANLATVLEGRTAIGQESGIPILVEVVELGSARGKENAAAALLHLYSNSTRFLSIVLQEGAIPPIVALSHSGPLRANEKARALFNQFICQRHGSGGRG 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0040 567 Pfam Armadillo/beta-catenin-like repeat 360 393 IPR000225 GO:0005515
Dere05g0040 567 Pfam Armadillo/beta-catenin-like repeat 397 433 IPR000225 GO:0005515
Dere05g0040 567 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 365 407 IPR000225 GO:0005515
Dere05g0040 567 FunFam RING-type E3 ubiquitin transferase 295 562 - -
Dere05g0040 567 SUPERFAMILY ARM repeat 290 556 IPR016024 -
Dere05g0040 567 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 447 488 IPR000225 GO:0005515
Dere05g0040 567 MobiDBLite consensus disorder prediction 195 250 - -
Dere05g0040 567 Gene3D - 461 558 IPR011989 -
Dere05g0040 567 Gene3D - 256 360 IPR011989 -
Dere05g0040 567 Gene3D - 361 460 IPR011989 -
Dere05g0040 567 PANTHER U BOX DOMAIN-CONTAINING 42 554 - -
Dere05g0040 567 SMART arm_5 436 475 IPR000225 GO:0005515
Dere05g0040 567 SMART arm_5 476 516 IPR000225 GO:0005515
Dere05g0040 567 SMART arm_5 395 435 IPR000225 GO:0005515
Dere05g0040 567 SMART arm_5 354 394 IPR000225 GO:0005515
Dere05g0040 567 MobiDBLite consensus disorder prediction 187 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0040 Dere-ChrDere05 569443 573102 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0040 303 567 U-box Gene Family AT2G23140 70.175 6.66e-126 382
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1955 04 22356219 22374490 Dere05g0040 05 569443 573102 CCT