Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0039 ATGCTCTGGGCTTTTACTGCTCCCACTGTGGCTATCACTGAATGGGAAAGAAGTGCAACCTACTGGAAGCCGCAGAAAAAAGCTGGAAAGGGAAAAATGATAGAAGCTTGGAGAGAGAAAGGGAAGAAAGTGTGCTCCTACTTATTCTATTATGGCTTTAGAGTCTGCTTTGCTCCTGACAACTCCTACGTTGCCCTGTGCTCCTCCCTTTTTCACTGCATATTTCCTTTTGGTGTGGGGTGCGCCGATTCGAGAGGGGAGAGTCCACCACTTGATTTTGTTTTAAAGGAGGAGTGTCCAAAAGCTGCAAGTTTCGCTGTATGCATGGTTTTGCTTCTAGCCATCACTGAGGGCGTTATGTTAGTATTAGTGATGATTTTGCTAAGAAATTTATGGGGTGGTCTTTACAGTAGTGAAGCAGAAGTTGTTAAACAGAGAATTAAGAATTTGGAACATAATGAAACATCATCAGGCATTAAGGAAGCTCTAAGGGAACAGACACGTCTGACTCTGGCTCACACCAATCTAATACCTAACCACACTGTAAAGGCATTAAATGCAAACTGGTGCGAATTGAACAATGTCAAGCCGGTTGATCCTATAAAGTCTTCAAATTCAAAACAAGCATCTTCTCCTCAAGGGTATATGGATTCCAGTGCAACTAGGGATTTGCCTGTTTCAGGTCATCCCAGGGGCTACCAGCCATCCTCACCTGAGTCAGTTCATGGTTGTTCATTCAGTTCAACAGATAAGAACTTAACTTTTGGTGGAATCCCCCAAGAGGGATCATCTCCATTGCATCCCTGTCCAACTTCAGATGGTTCATTAAGTGGTTCTGAAGACATGTCTGCTAGCTCCGATGAAAGGAGTGTGGATACAGTTAGCCAACACTCAATGTCACCATCTAAAAGGGAATCTTCCAATGCCTTCAGCTCAGAAGGATCTCAAATTCATGTTAGAACTGCTTCTGATTCCAGTGCAGTTCCAGTGAAAATTTGCCTCAAGGAACACAAGGTGATAGCGGCAATGCTTCTCAGGCATTGGGCAATTCAGGTTTGGGCGTTGGTGGAAGACCGAAGGAGCTCATCGCTTGATGCTCAGAGGGACGCAACAGCAGAACTCCGCCATCTTGCTAAGCATAATATGGATAACCGAATTGTGATTGCAAACTATGGAGTCATTAGCTTATTAGTCGAACTACTCCAATCAACTGATACAAATGCAATTGCAAATGCTGGTGCAATTGATCCTCTGATTCATGTCCTTGAGACAGGAAGTACTGAAGCCAAGGAGAATTCAGCTGCCGCGCTTTACAGGTTATCAGTGATGGAAGAAAACAAGATCAGGATAGGGAGATCTGGGGCAATTAGGCCACTGGTTGATTTATTAGCAAATGGAACTCCAAATGGGAAAAAAGATGTTGCCACTGCTTTGTTTAATCTGTCAATATTCCATGAAAACAAGGGTCGGACAGTGCAGGCTGGTGCTGTGAGGCACCTTGTGGAGTTAATGGACCCAGCTGCGGGAATGGTTGAAAAGGCAGTGGCTGTTTTGGTAAATCTTGCTACAGTCCTAGAAGGAAGAACTGCAATTGGTCAGGAAGGTGGAATTCCTATTCTGGTGGAGGTTGTTGAATTGGGTTCAGCTAGAGGAAAGGAAAATGCAGCTGCCGCTCTTCTACATCTTTACTCAAACAGTACCAGGTTTTTAAGCATTGTGCTCCGAGAAGGAGCTATCCCACCAATAGTAGCTTTGTCACACTCAGGCCCCATAAGGGCCAATGACAAGGCTCGAGCTCTGTTTAACCAATTTATATGTCAAAGACATGGTAGTGGCGGGAGGGGCTGA 1848 0.447 MLWAFTAPTVAITEWERSATYWKPQKKAGKGKMIEAWREKGKKVCSYLFYYGFRVCFAPDNSYVALCSSLFHCIFPFGVGCADSRGESPPLDFVLKEECPKAASFAVCMVLLLAITEGVMLVLVMILLRNLWGGLYSSEAEVVKQRIKNLEHNETSSGIKEALREQTRLTLAHTNLIPNHTVKALNANWCELNNVKPVDPIKSSNSKQASSPQGYMDSSATRDLPVSGHPRGYQPSSPESVHGCSFSSTDKNLTFGGIPQEGSSPLHPCPTSDGSLSGSEDMSASSDERSVDTVSQHSMSPSKRESSNAFSSEGSQIHVRTASDSSAVPVKICLKEHKVIAAMLLRHWAIQVWALVEDRRSSSLDAQRDATAELRHLAKHNMDNRIVIANYGVISLLVELLQSTDTNAIANAGAIDPLIHVLETGSTEAKENSAAALYRLSVMEENKIRIGRSGAIRPLVDLLANGTPNGKKDVATALFNLSIFHENKGRTVQAGAVRHLVELMDPAAGMVEKAVAVLVNLATVLEGRTAIGQEGGIPILVEVVELGSARGKENAAAALLHLYSNSTRFLSIVLREGAIPPIVALSHSGPIRANDKARALFNQFICQRHGSGGRG 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0039 615 MobiDBLite consensus disorder prediction 200 220 - -
Dere05g0039 615 MobiDBLite consensus disorder prediction 200 321 - -
Dere05g0039 615 SUPERFAMILY ARM repeat 339 597 IPR016024 -
Dere05g0039 615 Gene3D - 307 406 IPR011989 -
Dere05g0039 615 Gene3D - 407 507 IPR011989 -
Dere05g0039 615 Gene3D - 508 603 IPR011989 -
Dere05g0039 615 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 495 536 IPR000225 GO:0005515
Dere05g0039 615 MobiDBLite consensus disorder prediction 238 321 - -
Dere05g0039 615 SMART arm_5 524 564 IPR000225 GO:0005515
Dere05g0039 615 SMART arm_5 484 523 IPR000225 GO:0005515
Dere05g0039 615 SMART arm_5 402 442 IPR000225 GO:0005515
Dere05g0039 615 SMART arm_5 443 483 IPR000225 GO:0005515
Dere05g0039 615 Pfam Armadillo/beta-catenin-like repeat 408 441 IPR000225 GO:0005515
Dere05g0039 615 Pfam Armadillo/beta-catenin-like repeat 445 482 IPR000225 GO:0005515
Dere05g0039 615 FunFam RING-type E3 ubiquitin transferase 343 610 - -
Dere05g0039 615 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 413 455 IPR000225 GO:0005515
Dere05g0039 615 PANTHER U BOX DOMAIN-CONTAINING 152 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0039 Dere-ChrDere05 538038 545679 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0039 351 615 U-box Gene Family AT2G23140 69.474 2.39e-124 379