Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0038 ATGAGGAAAAGTCCTTTATCAACAAATTTGAATTATGGAATGGTGATATTCTTCATTTGCTGTGATATGGAGACACCATTTTTAAAAGTGCTTGTTAATGGCATGTCCTCATTTTTGCATTCATCAATTTCTGGAAACTTGAAATCAGAACCTGTCTTGAAGTATTACCAAGAGGCAGAGGTGATACTTAAGTTGTTGAAGCCAATAATTGATGCCATTGCTAATTCTGATTTAGCTTCTGATGAAGTACTTATGGGGATATTTGAAGAACTGCATCAGACTGTTGAGGAATTGAGGGAGCTTATTGAGAGCTGGCAACTATTGTCTAGCAAAGTTTACATTTTTACTGTGTTTTCAGGTTTATTTTTTGATAGTAGTGGTATGGTCATTTTGTATGTGCTTAATGTAGAAGATGTGGTGGTTATGCAAGTTGAATCCTTAATATCTAAGATTCAGATGTTGGCACTTAATATTTTTGACCAGCTGAAGGCTTCCCACCAATATCTCCCTCATGAATTTAGTTCTGCTCATGTAGAGGACTGTGTTCAGAAAATAAAGAATTTGGAACATAATGAAACATTATCAGTCATTAAGGAAGCTCTCAGGGAACAGGCGGAAGGTGTAGGACCTAGTTCAGACGCCCTGGCAGAAATTGCTGAAGACCTGGGCATGAGGTCTAACCAGGAGGTTCTGATTGAGGCTGTGGCCCTTGAAAAGTTGAAGGAGAATGCAGAACAAAGTGAAAAGACAGCAGAAGCTGAATATATCGACCAGATAATTGCTCTTGTAACTCGTATGCATGAGCGTCTTGTTATGCTCAAGGAAGCCCAGAGCAATAGCCCAGTTCCAGTACCTCCTGATTTTTGCTGTCCTCTCTCTTTGGAGTTGATGACAGATCCAGTAATTGTGGCATCAGGGCAAACTTATGAGCGAGCTTTCATTAAGAACTGGATAGATCTGGGACTTACTGTTTGTCCAAAGACACGTCAGACTCTGGCTCACACCAATCTAATACCTAATTACACTGTAAAGGCATTAATTGCAAACTGGTGTGAATTGAACAATGTCAAGCTGGTTGATCCAATAAAGTCCTCAAACTCAAAACAAGCATCTTCCCTTCATGGGTATATGGATAAGAACTTAACTTCTAGTGGAATCCACCAAGAGGGATCATCACCATTGCATCCCTGTCCAACTTCAGATGTTTCATTAAGTGGTATGTCTAATGGACAGAGTTTGGATATTGCTAGAATATCACGAGCAGATTCTGAAGACATGTCTGCTAGCTCAGATGAAAGGAGTGTGGATTCAGTTAGCCAACACTCATTGTCACCATCTAAAAGGGAATCTTATAATGCCTTCAGCTCAGAAGGATCTCAAATTCATGTTAGAACTGCTTCTGATTCCAGTGCACTTGCAAGTGAAAATTTCCCTCAAGGAACACTAGGTGATTGCAGCAATGCTTCCCAGCCATTGGGCAATTCAGGTGATAGTAGAGATGCTTCTGGGGAGGTAAATCAAGGGCCAGACACTGCTTGTGCTTCTACCTGGAGTGCTCCACTGAGAGAACCTGGGTTTTGCCCTTCATTGGTAGAGGCCAGGCAACGAATCCAAGGTTATTGGCAGCGGCAATCAGATAGATTATGGATGGCATCTTCCACTGCTGTTGAAAGTAGACCTGATCTTTCTAGTATTGAAGGTCAGATTTGGACGTTGGTGGGAGACTTAAAGAGCTCTTCGCTTGATGCTCAGAGGGACGCAACAGCAGAACTCCGCCTTCTTGCTATGCACAATATGGACAACCGAATTGTCATTGCAAACTGTGGAGTCATTAGCTTATTAGTTGAACTACTCCAATCAACTGATACAAGGATCCAGGAGAATGCTGTGACAGCACTTCTCAACTTATCAATCAATGATAATAACAAAAGTGCAATTGCAAATGCTGGTGCAATTGATCCTCTGATTCATGTCCTTGAGACAGGAAGTACTGAAGCGAAGGAGAATTCAGCTGCCACGCTTTACAGCTTATCAGTGATTGAAGAAAACAAGATCAGGATAGGAAGATCTGGGGCAATTAAGCCACTGGTTGATTTATTAACAAATGGAACTCCCAGGGGGAAAAAGGATGCTGCAACTGCTCTGTTCAATCTGTCAATATTTCATGAAAACAAGGGTCGGATAGTGCAGGCTGGGGCTGTGAAGCAGCTTGTGGAGTTAATGGACCCTGCTGCTGGAATAATTGACAAGGCAGTGGCTGTTTTGGCAAATCTTGCTACAATTCCAGAAGGAAGAACTGCAATTGGTCAGGAAGGTGGAATTCCTGTTCTGGTGGAGGTTGTTGAATTGGGTTCAGCTAGAGGAAAGGAAAATGCAGCTGCCGCTCTTCTACATCTCTGCTCAAACAGTGCCAAGTTTTTAAGCATTGTGCTCCAAGAAGGAGCTATCCCACCAATAGTAGCTTTGTCACACTCAGGCACCCCAAGGGCCAAAGAAAAGGTATATATCAGCTTTGCAGAACTTAGAAAGGGTTGCCTTGCATATGGTAAAATAAAATCATCAAAGTTTGAAGAGGTTTTGCTGAGGTGGAAGCAAAAAGTGTCTCGTCATGCACTTGATCTTGATCAATTATGCCTGCTTCCGTCTTTGCTGTTGTTAGCTTCCTTTCTTAATTTCTGTTTCTTTTCTTCCCCACTTTATGCCTCTTTTCCCCTCCGGAACTTCTTAAAGCATTTCTTTAGACCTCGGCCACAGAATCTCCTCTAG 2766 0.4205 MRKSPLSTNLNYGMVIFFICCDMETPFLKVLVNGMSSFLHSSISGNLKSEPVLKYYQEAEVILKLLKPIIDAIANSDLASDEVLMGIFEELHQTVEELRELIESWQLLSSKVYIFTVFSGLFFDSSGMVILYVLNVEDVVVMQVESLISKIQMLALNIFDQLKASHQYLPHEFSSAHVEDCVQKIKNLEHNETLSVIKEALREQAEGVGPSSDALAEIAEDLGMRSNQEVLIEAVALEKLKENAEQSEKTAEAEYIDQIIALVTRMHERLVMLKEAQSNSPVPVPPDFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCELNNVKLVDPIKSSNSKQASSLHGYMDKNLTSSGIHQEGSSPLHPCPTSDVSLSGMSNGQSLDIARISRADSEDMSASSDERSVDSVSQHSLSPSKRESYNAFSSEGSQIHVRTASDSSALASENFPQGTLGDCSNASQPLGNSGDSRDASGEVNQGPDTACASTWSAPLREPGFCPSLVEARQRIQGYWQRQSDRLWMASSTAVESRPDLSSIEGQIWTLVGDLKSSSLDAQRDATAELRLLAMHNMDNRIVIANCGVISLLVELLQSTDTRIQENAVTALLNLSINDNNKSAIANAGAIDPLIHVLETGSTEAKENSAATLYSLSVIEENKIRIGRSGAIKPLVDLLTNGTPRGKKDAATALFNLSIFHENKGRIVQAGAVKQLVELMDPAAGIIDKAVAVLANLATIPEGRTAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCSNSAKFLSIVLQEGAIPPIVALSHSGTPRAKEKVYISFAELRKGCLAYGKIKSSKFEEVLLRWKQKVSRHALDLDQLCLLPSLLLLASFLNFCFFSSPLYASFPLRNFLKHFFRPRPQNLL 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0038 921 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 362 IPR013083 -
Dere05g0038 921 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 609 651 IPR000225 GO:0005515
Dere05g0038 921 Coils Coil 88 108 - -
Dere05g0038 921 Coils Coil 227 257 - -
Dere05g0038 921 Gene3D - 550 847 IPR011989 -
Dere05g0038 921 MobiDBLite consensus disorder prediction 432 514 - -
Dere05g0038 921 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 732 773 IPR000225 GO:0005515
Dere05g0038 921 PANTHER U BOX DOMAIN-CONTAINING 51 834 - -
Dere05g0038 921 ProSiteProfiles U-box domain profile. 283 357 IPR003613 GO:0004842|GO:0016567
Dere05g0038 921 SUPERFAMILY ARM repeat 566 841 IPR016024 -
Dere05g0038 921 MobiDBLite consensus disorder prediction 379 416 - -
Dere05g0038 921 MobiDBLite consensus disorder prediction 379 517 - -
Dere05g0038 921 Pfam U-box domain 284 354 IPR003613 GO:0004842|GO:0016567
Dere05g0038 921 FunFam RING-type E3 ubiquitin transferase 553 845 - -
Dere05g0038 921 SMART Ubox_2 287 350 IPR003613 GO:0004842|GO:0016567
Dere05g0038 921 SMART arm_5 680 720 IPR000225 GO:0005515
Dere05g0038 921 SMART arm_5 639 679 IPR000225 GO:0005515
Dere05g0038 921 SMART arm_5 598 638 IPR000225 GO:0005515
Dere05g0038 921 SMART arm_5 721 760 IPR000225 GO:0005515
Dere05g0038 921 SMART arm_5 761 801 IPR000225 GO:0005515
Dere05g0038 921 Pfam Armadillo/beta-catenin-like repeat 682 719 IPR000225 GO:0005515
Dere05g0038 921 Pfam Armadillo/beta-catenin-like repeat 639 678 IPR000225 GO:0005515
Dere05g0038 921 Pfam Armadillo/beta-catenin-like repeat 600 637 IPR000225 GO:0005515
Dere05g0038 921 SUPERFAMILY RING/U-box 277 361 - -
Dere05g0038 921 FunFam RING-type E3 ubiquitin transferase 283 358 - -
Dere05g0038 921 CDD RING-Ubox_PUB 285 337 IPR045210 -
Dere05g0038 921 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 691 733 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0038 Dere-ChrDere05 510655 515422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0038 244 842 U-box Gene Family AT2G23140 58.898 0.0 676