Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0030 ATGGGTAATCACAGGTTCAAATTTTCAGATATGATACCAAATGCTTGGTTTTACAAGCTCAAAGACATGAGCAGATCAAGGAAGGGGAATGTTTCTCATGCTATGAAGAACAAGCCAAGCTCACCAACAACATCTCAAAGATCGCAGCCAAGGTATTCGCATTACTTCCCCACTGAACCAAGCAGAGCTGGTAAGTTATACAACTCACCCACTTTCGCCAAAGCTTCAGACATTTCATTCATTGATTCACCAAGAAGGTCTTCCAAGAGAAGAGCCAGGAGAAAAACCATTTATTACAAGCCTTCTTCTCCCACACTTGTTTCTTCCTCTGCCTCAGCCCCTTCTAGCTGCCATTCCACAAATAACTGGACTCACCCCAATCAAACTCAGTCTCCAGACTACTATGTCTCCTCCGTTGAGAGTTCTTCTGAAACAGATCTCCATCATGAACATGTTTCATCGGAGTCTGATTGTGATGATAGCTTTGCTGCTCCTGACTTGTTTAATGGGCTACCCTCGAATTGCAGTTGCAGAGTTAGTTCTTCTACCAATGATATCATCATCGACATGAACAATGAAGTACCCTTCGCAGGGCATTCAGAAAAGCTAGATGGGTTTGAAACGATTTCAGAGTTAGATCTTCCTCCAATATTAACCAAGCCCTTAAAGTTTGATGAGAAGGTAATTGAGGCCACTGAGTTGAGAAGTTCATCTAAGTTAGATAAGCTAAAGGATCATCACTCTCTATCTCTCAAGAATAGCAAGCAGGAAAGCAGTAGAACTCAAAGAGAACGCAAATCAAGCCCAGTTGCTCGAAAGTCGTCTGCTAATTCTACAGGTATAAGACTTAGAGTCAATTCTCCAAAACTAGCAAGCAGGAAAGTCCAAGCCTTTGCAAGAAGGGGTATGGCATCCAGCGTAAGCAAAGCTTCAAGGAATACAGGCTTTCCCGAGGGCTTTGCAGTTGTAAAGTCCTCATTTGATCCACAAAAAGACTTCAGGGATTCAATGGTGGAGATGATTTTGGAGAACAATATCCGGGCATCAAAGGATTTGGAGGATCTACTTGCCTGCTATCTTTCACTGAACTCAAGTGAATACCACGAGCTAATTGTCAAAGCATTTGAGCAAATTTGGTTTGACATGGCTCAACTCAGATTGTAA 1164 0.4235 MGNHRFKFSDMIPNAWFYKLKDMSRSRKGNVSHAMKNKPSSPTTSQRSQPRYSHYFPTEPSRAGKLYNSPTFAKASDISFIDSPRRSSKRRARRKTIYYKPSSPTLVSSSASAPSSCHSTNNWTHPNQTQSPDYYVSSVESSSETDLHHEHVSSESDCDDSFAAPDLFNGLPSNCSCRVSSSTNDIIIDMNNEVPFAGHSEKLDGFETISELDLPPILTKPLKFDEKVIEATELRSSSKLDKLKDHHSLSLKNSKQESSRTQRERKSSPVARKSSANSTGIRLRVNSPKLASRKVQAFARRGMASSVSKASRNTGFPEGFAVVKSSFDPQKDFRDSMVEMILENNIRASKDLEDLLACYLSLNSSEYHELIVKAFEQIWFDMAQLRL 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0030 387 Pfam DNA-binding domain 1 41 IPR025830 GO:0003677
Dere05g0030 387 NCBIfam uncharacterized plant-specific domain TIGR01568 320 382 IPR006458 -
Dere05g0030 387 MobiDBLite consensus disorder prediction 109 151 - -
Dere05g0030 387 MobiDBLite consensus disorder prediction 28 68 - -
Dere05g0030 387 MobiDBLite consensus disorder prediction 242 278 - -
Dere05g0030 387 ProSiteProfiles OVATE domain profile. 322 381 IPR006458 -
Dere05g0030 387 Pfam Transcriptional repressor, ovate 326 382 IPR006458 -
Dere05g0030 387 MobiDBLite consensus disorder prediction 33 55 - -
Dere05g0030 387 MobiDBLite consensus disorder prediction 109 142 - -
Dere05g0030 387 MobiDBLite consensus disorder prediction 242 270 - -
Dere05g0030 387 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 139 382 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0030 Dere-ChrDere05 383534 384697 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Dere05g0030 Ovate 2e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1971 04 22491631 22492701 Dere05g0030 05 383534 384697 CCT