Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0026 ATGCCACTCTTCCTTCTTCTCCTCATTAACATGCTCCTCCAACTCGCCGCCGCTGACTACGGTGGCTGGCAAAGTGCCCATGCCACCTTCTACGGTGGCGGAGACGCCTCCGGCACCATGGGAGGAGCATGTGGGTATGGTAATTTGTACAGTCAAGGGTATGGAACTAACACTGCAGCTCTGAGCACAGCTTTGTTTAACAATGGCTTAAGCTGTGGGGCTTGTTATGAAATGCGATGCACCGACGACCCACGATGGTGCAAGTCTGGCTCCATCATTATTACTGCTACAAACTTTTGCCCTCCAAACTTTGCTTTGCCCAACAACAATGGCGGTTGGTGCAACCCTCCCCTGCAGCACTTTGATATGGCAGAACCAGCCTTCCTGCAGATCGCTCAATACAGAGCTGGGATAGTGCCTGTGTCCTTTAGAAGAGTGCCGTGTGTGAAGAAGGGAGGAATAAGATTCACCATTAATGGGCATTCCTACTTCAACCTGGTCTTGATAAGCAACGTAGGAGGTGCAGGGGATGTGCATGCAGTGTCCATCAAAGGCTCGAGAACTGGATGGCAATCCATGTCAAGAAATTGGGGTCAGAACTGGCAGAGCAATTCCTACCTCAATGGCCAATCCCTCTCTTTTCAGGTCACAACCAGTGACGGTAGAACCGTCACAAGCTACAACGTGGCGCCATCTAATTGGCAGTTTGGTCAGACCTTTCAAGGGGGTCAGTTTTAG 738 0.5081 MPLFLLLLINMLLQLAAADYGGWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYEMRCTDDPRWCKSGSIIITATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRVPCVKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSRTGWQSMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRTVTSYNVAPSNWQFGQTFQGGQF 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0026 245 PRINTS Expansin signature 80 91 IPR002963 GO:0009664
Dere05g0026 245 PRINTS Expansin signature 92 102 IPR002963 GO:0009664
Dere05g0026 245 PRINTS Expansin signature 152 164 IPR002963 GO:0009664
Dere05g0026 245 PRINTS Expansin signature 53 67 IPR002963 GO:0009664
Dere05g0026 245 PRINTS Expansin signature 228 244 IPR002963 GO:0009664
Dere05g0026 245 PRINTS Expansin signature 111 128 IPR002963 GO:0009664
Dere05g0026 245 PRINTS Expansin signature 199 220 IPR002963 GO:0009664
Dere05g0026 245 PRINTS Expansin signature 128 141 IPR002963 GO:0009664
Dere05g0026 245 PRINTS Expansin signature 164 185 IPR002963 GO:0009664
Dere05g0026 245 PANTHER EXPANSIN-A15 5 245 IPR002963 GO:0009664
Dere05g0026 245 SUPERFAMILY Barwin-like endoglucanases 22 171 IPR036908 -
Dere05g0026 245 Pfam Lytic transglycolase 58 143 IPR009009 -
Dere05g0026 245 SUPERFAMILY PHL pollen allergen 150 242 IPR036749 -
Dere05g0026 245 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 242 IPR007117 -
Dere05g0026 245 Gene3D - 9 148 IPR036908 -
Dere05g0026 245 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576
Dere05g0026 245 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Dere05g0026 245 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Dere05g0026 245 PRINTS Expansin/Lol pI family signature 40 58 IPR007118 GO:0005576
Dere05g0026 245 PRINTS Expansin/Lol pI family signature 136 152 IPR007118 GO:0005576
Dere05g0026 245 PRINTS Expansin/Lol pI family signature 22 37 IPR007118 GO:0005576
Dere05g0026 245 Pfam Expansin C-terminal domain 154 231 IPR007117 -
Dere05g0026 245 CDD DPBB_EXPA_N 22 148 - -
Dere05g0026 245 Gene3D - 152 245 IPR036749 -
Dere05g0026 245 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 41 153 IPR007112 -
Dere05g0026 245 SMART dpbb_1 58 143 IPR007112 -
Dere05g0026 245 FunFam Expansin 153 245 - -
Dere05g0026 245 FunFam Expansin 13 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0026 Dere-ChrDere05 355136 356087 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0026 5 245 Expansin Gene Family AT2G40610 82.716 1.02e-149 416
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1974 04 22522761 22525123 Dere05g0026 05 355136 356087 CCT
Dere05g0026 05 355136 356087 Dere05g0026 05 355136 356087 ECH
Dere04g1974 04 22522761 22525123 Dere05g0026 05 355136 356087 ECH