Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0024 ATGGTGACTTTACTCTCTTCTTCTTCAGCTGTTACAATACCAGAATCCATGCTCATATTGCTGTTGCGAGGAATTGATCTTAGGATAATGGGGTCCGACATTTGTGTGAACGTTTTGTGTGGAGCGACTACCGCTCATGAAGGGAAAAAGGGGTGGCCTTTGCGATCTGGTGGATTTGCCAAACTCTGCGACAAGTGCGGATCTGCCTATGAAAATTCAGTCTTCTGTAAAAAGTTCCACCTTGAAGAGTCTGGTTGGAGGGAATGCAACTTCTGCAAAAAACCTATCCACTGTGGGTGCATAGCATCTAGATCTTTGTTCGAGTACCTTGATTTCGGCGGTATAGGTTGTATTAGCTGTGTAAAGTCTCCCCAACTTCATTTGATGCGAAATACTGAGATTTCTAATGGGTCTATTAAATCAACCAAAAATGCTGCAAGTGATCAACCTTCTTCTCGTATTGATAGTAGAATTTTTGTGGATAGTGTTGATGAAGGAAAACTTATGCAACTGTGCAGAGTTGTTGAAGCTAGTGAATCTTGTCATTGGCCTCAAGTTCAGAGAGATGGGATAGTTTTATCAAGTGGGCAAAACATCCAAGAAGTTAAGTGTCCAATCAGGGAAGTGGATGCAGGATTTTCAAATGTTATGAATCCATCTGTTCAGTCATTAACATTTGCCACGTTAGAAAATAGTAGACCAATATGGGAGGCAAAAAATATGCATGAATCCCCTGCACAGCCATCTTTAAGTATGTCTCTGGGTACTCCATCAGGAAACTCTGTCCTGCCTTCCGCTGGAGAGATTGTAGAAGGAAGAGTAGAGGAAAAACCATCTCCTTTTCATCATGGGCAAAGATCTCAGCCTATATTGCCTAAACCATTGAAGGCTGGGCTTACTGTGAACCAAGAAACAAATAAAGGCATGAAGTCTCAGGCACGCATAGCCCGGCCGCCTGCTGAAGGAAGGGGCAAGAATCAGTTACTTCCACGATACTGGCCCCGGATCACTGATAAAGAGCTAGAGCAATTGTCTGGAGATTTGAAGTCCACTGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGGCGAATTGGCCGTCTTGTTCTTCCAAAAGCTTGTGCTGAAGCTTACTTTCCTCCCATTTCTCAATCAGAAGGTCTTCCTTTGCGGATCCAAGATGTGAAGGGGAATGAGTGGACATTTCAGTTCCGATTTTGGCCTAACAACAACAGTAGGATGTATGTCTTGGAGGGTGTGACCCCTTGTATACAGTCCATGCAATTACGTGCTGGTGATACTGTAATATTTAGTCGGATGAATCCTGGGGGCAAACTTGTTATGGGTTTCAGGAAGGCATCTACTTCTGTAGATACACAGGATGCCTCTACATCTGCACCTTCTAATGGCATTTCAATGAAGGAAACAGCTCATTCTGGGGTCACGGAGAAGCTTCCCTCAGATAATAGTTATTCTGTTCTTCTCCAATCAATGAAGGGGAAAGGGGAATCTCACTTAAATGAACTCTCAGAACATCTGCATTTGAATAGTGCAGATGCCAGTTTGCCTAAGACTGAAAATTGTGGGGACATGACAAACTATGATTCATTGCAGTCAGTTTTAGAGAAGAAGAGGACTCGGAATATTGGGCCTAAGAGTAAGAGGTTGCTCATTCACAGTGAAGATGCTCTGGAGTTGAGACTTACATGGGAAGAAGCTCAAGACTTACTTCGTCCACCACCTAGCATCCAGCCCACCATTGTTACAATAGAGGACCATGAATTTGAAGAATATGATGAACCTCCGGTTTTTGGAAAAAGAACTATATTCAGTACACATTCATCTGGGAGACAGGAACAATGGGCTCAATGTGATGATTGCAGTAAATGGCGAAGGTTGCCAGTAGATGCTCTACTTCCTCCTAAGTGGACATGTTCAGACAATGTTTGGGATGCAAGCAGGTCTTTGTGTTTTGCACTGGAGGAGCTCAATCCAAATGAGTTGGAAAATCTTCTGAGATCTAGCAAAGATTATAAGAAGAAAAGAACTGCAGAGAACAGCAAGTCACCCCAAGAACATGAACCTTCCGGCTTAGATGCTCTTGCCAGTGCGGCAGTTTTAGGAGATAATTTTCTTGGCCCTGCTGAGTCATCAGCTGGAGTTACCACCAAACATCCTCGACACCGTCCAGGATGCACTTGCATAGTGTGCATCCAGCCACCAAGTGGGAAGGGGAGACATAAGCCGACATGTACTTGCAATGTGTGCATGACAGTGAAACGCCGTTTCAAAACCCTTATGATGCGTAAAAAGAAACGTCAATCAGAACGTGAAGCAGATGCTGCCCAGAAGGAACAAATCCACCCGAGGGATGAATCTGAAATGAATGGAGCATCAAGAGACGATACAAGTTGTTTGGTAAAAGAGGGAGGCTTTATCAGAGGTGAGCTTGAGGTGGGTGAATCCAGTACGGGACAAATAGATCTGAATTGTCATCCCAATCGTGAAGACATGCTAGATGTACCAGGATTGAGCATGACTAGTCATCTTGAAACAACGAACTATCTATTATAG 2583 0.4379 MVTLLSSSSAVTIPESMLILLLRGIDLRIMGSDICVNVLCGATTAHEGKKGWPLRSGGFAKLCDKCGSAYENSVFCKKFHLEESGWRECNFCKKPIHCGCIASRSLFEYLDFGGIGCISCVKSPQLHLMRNTEISNGSIKSTKNAASDQPSSRIDSRIFVDSVDEGKLMQLCRVVEASESCHWPQVQRDGIVLSSGQNIQEVKCPIREVDAGFSNVMNPSVQSLTFATLENSRPIWEAKNMHESPAQPSLSMSLGTPSGNSVLPSAGEIVEGRVEEKPSPFHHGQRSQPILPKPLKAGLTVNQETNKGMKSQARIARPPAEGRGKNQLLPRYWPRITDKELEQLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPLRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVIFSRMNPGGKLVMGFRKASTSVDTQDASTSAPSNGISMKETAHSGVTEKLPSDNSYSVLLQSMKGKGESHLNELSEHLHLNSADASLPKTENCGDMTNYDSLQSVLEKKRTRNIGPKSKRLLIHSEDALELRLTWEEAQDLLRPPPSIQPTIVTIEDHEFEEYDEPPVFGKRTIFSTHSSGRQEQWAQCDDCSKWRRLPVDALLPPKWTCSDNVWDASRSLCFALEELNPNELENLLRSSKDYKKKRTAENSKSPQEHEPSGLDALASAAVLGDNFLGPAESSAGVTTKHPRHRPGCTCIVCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREADAAQKEQIHPRDESEMNGASRDDTSCLVKEGGFIRGELEVGESSTGQIDLNCHPNREDMLDVPGLSMTSHLETTNYLL 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0024 860 Pfam CW-type Zinc Finger 623 665 IPR011124 GO:0008270
Dere05g0024 860 MobiDBLite consensus disorder prediction 774 801 - -
Dere05g0024 860 FunFam B3 domain-containing transcription repressor VAL1 334 461 - -
Dere05g0024 860 CDD B3_DNA 354 455 IPR003340 GO:0003677
Dere05g0024 860 Gene3D - 334 461 IPR015300 -
Dere05g0024 860 SUPERFAMILY DNA-binding pseudobarrel domain 354 456 IPR015300 -
Dere05g0024 860 ProSiteProfiles B3 DNA-binding domain profile. 356 457 IPR003340 GO:0003677
Dere05g0024 860 MobiDBLite consensus disorder prediction 772 804 - -
Dere05g0024 860 Gene3D - 613 667 - -
Dere05g0024 860 ProSiteProfiles Zinc finger CW-type profile. 618 668 IPR011124 GO:0008270
Dere05g0024 860 MobiDBLite consensus disorder prediction 462 486 - -
Dere05g0024 860 Pfam B3 DNA binding domain 356 455 IPR003340 GO:0003677
Dere05g0024 860 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 32 855 - -
Dere05g0024 860 SMART B3_2 356 457 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0024 Dere-ChrDere05 327625 334604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0024 30 844 B3 DNA Binding Superfamily AT2G30470 52.439 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere05g0024 B3 8.7e-16 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1990 04 22743234 22752571 Dere05g0024 05 327625 334604 CCT
Dere05g0024 05 327625 334604 Dere05g0024 05 327625 334604 ECH