Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0016 ATGTCTGTACAATCCACTCTCAAGCTCCAGCAGCGCAGGCCTGCAACTAACAGCACCCCTTTTGAGGTTGAGGAGGGTGATTCACTATGCAAAACAAGGAGAAAAACCCGACAAAAGCTCCTCAGAATCATACTCACTGACCACGACGCTACGGATACCGACACTTCCAGTGATGAAGATCCAGAGAAACCTCCGAGACTCCCAAGAGTTAAGAAGCATATCACCGAGATCACCATGCATCTTCCCTCATCCCATTCTTCTTCCTGTTCCTCCCTCCCTTGCTTCCCAAAACAGGGCCCTACCCACTTCAAGAGACCCACGAAATCTCCGAACGCCACCACCTCCTCTCGCTGCCACAACAAGTTCAGGGGTGTTCGGCAGAGGCCGTGGGGTCGCTGGGCCGCCGAGATCCGAGACCCAACCCGTCGGAAGCGGGTCTGGCTGGGGACCTTCGACACGGCGGAGGAAGCCGCCACCGAGTACGACAAGGCTGCACTCATGCTCAAGGGTCCTAATGCCGTTACCAACTTCCCTAACTCCGTCGTGATGGAAAAAGAAACAACGCCGGAAGCATTGGACACCCCAAGCAACGACGGTTTTGCATCACCAGACACAATAGCGTCTCCGACGTCAGTCCTGGCCTGCGACAGCGATTCTACGTCGTTCGACGGTTTCCGTTTCGGCGACGTGGATGCCTTCGGTTTCGATATTGACGTGCCGTTAAGTCTGACGGACATGAACGTGGTGCTGTCCAGTCAGAAGCAGTTCGGGAAGGAAGACTTCGGCGAGTTTGACCTGGACGAGTTCTTGAGGTGGCCTAACTAA 825 0.5491 MSVQSTLKLQQRRPATNSTPFEVEEGDSLCKTRRKTRQKLLRIILTDHDATDTDTSSDEDPEKPPRLPRVKKHITEITMHLPSSHSSSCSSLPCFPKQGPTHFKRPTKSPNATTSSRCHNKFRGVRQRPWGRWAAEIRDPTRRKRVWLGTFDTAEEAATEYDKAALMLKGPNAVTNFPNSVVMEKETTPEALDTPSNDGFASPDTIASPTSVLACDSDSTSFDGFRFGDVDAFGFDIDVPLSLTDMNVVLSSQKQFGKEDFGEFDLDEFLRWPN 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0016 274 Pfam AP2 domain 121 170 IPR001471 GO:0003700|GO:0006355
Dere05g0016 274 PIRSF PTI6 6 274 IPR017392 GO:0003700
Dere05g0016 274 SMART rav1_2 121 184 IPR001471 GO:0003700|GO:0006355
Dere05g0016 274 Gene3D AP2/ERF domain 120 180 IPR036955 GO:0003700|GO:0006355
Dere05g0016 274 ProSiteProfiles AP2/ERF domain profile. 121 178 IPR001471 GO:0003700|GO:0006355
Dere05g0016 274 SUPERFAMILY DNA-binding domain 121 180 IPR016177 GO:0003677
Dere05g0016 274 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Dere05g0016 274 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Dere05g0016 274 FunFam Ethylene-responsive transcription factor 2 120 179 - -
Dere05g0016 274 MobiDBLite consensus disorder prediction 1 23 - -
Dere05g0016 274 CDD AP2 121 180 IPR001471 GO:0003700|GO:0006355
Dere05g0016 274 MobiDBLite consensus disorder prediction 1 28 - -
Dere05g0016 274 MobiDBLite consensus disorder prediction 48 67 - -
Dere05g0016 274 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 37 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere05g0016 Dere-ChrDere05 250550 251374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0016 31 213 AP2-EREBP Transcription Factor Family AT4G27950 43.617 4.15e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere05g0016 AP2 1.6e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere04g1999 04 22869928 22873445 Dere05g0016 05 250550 251374 CCT
Dere05g0016 05 250550 251374 Dere05g0016 05 250550 251374 ECH