Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere05g0007 ATGGCTCGAACCAGACTGGCTTGCAATTTTGAGGTGTTTTACAGATTGATGGCATCATCGTCGAGCAGTGGATTGACATTCAAGCTACATCCCTTGGTGATAGTCAACATATCGGATCATTATACTCGGGTTAAGTCACAGCTGAATCCACCGGTTGCTGTCCACCACAGAAGCACCACCTCCGCCAACACCAATGGTGCTGACGGTATGGCTTCTTTACCCCCGAGGGTGTACGGATGCGTGATAGGGGTACAGAGGGGACGCACCGTGGAGATCTTCAATAGCTTCGAACTTCTCTACGATCCTTCTACCCATTCCCTTGACCGTTCTTTTCTCGAGAAGAAGCAGGAGCTCTACAAGAAGGTTTTCCCCCACTTCTACATACTCGGATGGTATTCGACTGGGAGCGATGCACAGGAATCAGATATGCATATTCACAAAGCTTTAATGGATATAAATGAAAGTCCAGTTTATGTACTTCTCAATCCTTCAATCAATCATGCTCAGAAGGATCTCCCAGTCAGTATTTATGAAAGTGAACTGCATGTAATAGATGGGATTCCACAACTTATATTTGTGCGCTCATGCTACACTATTGAGACTGTTGAAGCAGAACGGATTTCAGTTGATCATGTTGCACATCTTAAGCCATCAGATGGTGGTTCAGCAGCTACCCAATTGGCTGCTCACCTTACTGGTATACACAGTGCTATTAAAATGCTGCATAGCAGAATTAAGGTGCTGCATCATTATCTTCTTGCAATGCAGAAAGGTGATGTACCTTGTGACAATTCTCTGCTAAGACAAGTGTCAAGTCTCTTGAGAAGATTGCCTGCTATTGAATCTGGGAAATTTCAAGATGATTTCTTAATGGAATACAATGATACCTTACTGATTACTTACCTCGCCATGATGACCAACTGCTCAAGTGCAATGAACGAACTGGTCGACAAATTCAATACTGCATACGACAGGCATAGCAGAAGGGGTGGGCGAACTGCTTTTATGTGA 1011 0.4411 MARTRLACNFEVFYRLMASSSSSGLTFKLHPLVIVNISDHYTRVKSQLNPPVAVHHRSTTSANTNGADGMASLPPRVYGCVIGVQRGRTVEIFNSFELLYDPSTHSLDRSFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVSIYESELHVIDGIPQLIFVRSCYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPCDNSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLITYLAMMTNCSSAMNELVDKFNTAYDRHSRRGGRTAFM 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere05g0007 336 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 18 327 - -
Dere05g0007 336 CDD MPN_CSN6 25 332 IPR033859 GO:0000338|GO:0008180
Dere05g0007 336 FunFam COP9 signalosome subunit 6 17 217 - -
Dere05g0007 336 Gene3D Cytidine Deaminase, domain 2 13 217 - -
Dere05g0007 336 SMART pad1_6 26 182 IPR000555 GO:0005515|GO:0008233|GO:0008237
Dere05g0007 336 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 23 155 IPR000555 GO:0005515|GO:0008233|GO:0008237
Dere05g0007 336 Pfam Maintenance of mitochondrial structure and function 203 317 IPR024969 -
Dere05g0007 336 ProSiteProfiles MPN domain profile. 52 183 IPR037518 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere05g0007 18 322 Eukaryotic Initiation Factors Gene Family AT2G39990 23.548 2.77e-08 52.8