Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2831 ATGATCATCGGATATGGTAAAACCAATACCGTGGTCTCCGGCGACCTGAACAATATTGGCGGCACTCCCACGTTTGAGACTGCTTCTTTTGCTATAAAGGGGAAGGGATTCATAGCCAAAGACATAGGATTCAGGAACACTGCAGGTGCTCATTTGAAGGCTCCCAGAGACATGAAGAGAGGAGAAGAAGAGAAGGGAGGAGGGCAGCAGAGAGAAACCGAAACCAAAGAGAAGATGAGGAAGAAGAAGAGAAGGAGGAGGTTGCATGCACGACTATTTTTACAAGGAGTTCCAGCAAGCTATTATCACTCCATGGCCATGCCCATTTGTCCTCCGGAGTCAGCAGGCATGTGA 354 0.4831 MIIGYGKTNTVVSGDLNNIGGTPTFETASFAIKGKGFIAKDIGFRNTAGAHLKAPRDMKRGEEEKGGGQQRETETKEKMRKKKRRRRLHARLFLQGVPASYYHSMAMPICPPESAGM 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2831 117 SUPERFAMILY Pectin lyase-like 1 50 IPR011050 -
Dere04g2831 117 Gene3D - 1 77 IPR012334 -
Dere04g2831 117 PANTHER PECTINESTERASE 1 51 - -
Dere04g2831 117 MobiDBLite consensus disorder prediction 49 87 - -
Dere04g2831 117 Pfam Pectinesterase 1 51 IPR000070 GO:0030599|GO:0042545
Dere04g2831 117 MobiDBLite consensus disorder prediction 52 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2831 Dere-ChrDere04 39752394 39752950 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2831 1 50 Carbohydrate Esterase AT1G53840 66.000 9.59e-16 70.1