Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2824 ATGCTCTACAATGGAGTAACAATTCTAGGAAGCGATTGTCGCTTCTTCTACCTCACAACATCCATTCCGTCCAACAGACCCATCAAACTCCCTATTCAAAGTCCAATTGGTTTCGCTTCCCTCAAAGTTAAAGCTATGCCCATTAACAATGGCTTCGTTGTGGCCGATGCCTCCTCTGAATTGAGCTTCTACGACCGTCTGGGTATACCCGAATCCGGATCCGTACCAGAGATCAAACACGCTTACAAGCAGCTGGTCCGCAAGTACCACCCGGATGTGTCGCCGCCGGGTCGGGTCGAAGAGTATACCAAGCGCTTCATTCAAGTCCAGGAAGCCTATGAGACCTTGTCAGATCCAATAAGGAGAGCTTTGTATGACAGGGACATGGCTATCGGGCTTCACTTGGCCTTCTCTGCTCGCAGACGCTACTGCGACGATGAGATAATTGAACAAAAGAGTGAATGGAAAGCTCGTTGGCAGACTCAGCTGTCTGAGCTGAAGAAAAGAAGTAATTACAGAGATGCTAATAGAAGCATGTCATGGGCTGCTCGAGTGCGTCGCAAGAGGGAAGAATCCTTAAATAAATTATAA 591 0.4788 MLYNGVTILGSDCRFFYLTTSIPSNRPIKLPIQSPIGFASLKVKAMPINNGFVVADASSELSFYDRLGIPESGSVPEIKHAYKQLVRKYHPDVSPPGRVEEYTKRFIQVQEAYETLSDPIRRALYDRDMAIGLHLAFSARRRYCDDEIIEQKSEWKARWQTQLSELKKRSNYRDANRSMSWAARVRRKREESLNKL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2824 196 ProSiteProfiles dnaJ domain profile. 62 129 IPR001623 -
Dere04g2824 196 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 58 192 - -
Dere04g2824 196 Coils Coil 182 196 - -
Dere04g2824 196 Pfam DnaJ domain 63 126 IPR001623 -
Dere04g2824 196 PRINTS DnaJ domain signature 82 97 IPR001623 -
Dere04g2824 196 PRINTS DnaJ domain signature 101 121 IPR001623 -
Dere04g2824 196 PRINTS DnaJ domain signature 64 82 IPR001623 -
Dere04g2824 196 CDD DnaJ 63 118 IPR001623 -
Dere04g2824 196 SUPERFAMILY Chaperone J-domain 59 133 IPR036869 -
Dere04g2824 196 Gene3D DnaJ domain 53 192 IPR036869 -
Dere04g2824 196 FunFam Chaperone protein dnaJ 20, chloroplastic 48 157 - -
Dere04g2824 196 ProSitePatterns Nt-dnaJ domain signature. 106 125 IPR018253 -
Dere04g2824 196 SMART dnaj_3 61 121 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2824 Dere-ChrDere04 39341984 39343803 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2824 64 126 C2H2 Transcription Factor Family AT1G74250 42.424 6.99e-07 47.0