Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2820 ATGGCAGCACATGGTGTAGATCACCATCATTCTCCCTCTGATGCCTCAAGCATCTCAGGAGGCTCCAAAGGCAATTCCTCCAGAGAAGTTATCGAAAACCAGAAGATGAAGATGATTACACTTTCCAGCGATGATTCAGTTCAAGGGTCGAAGGTTGAACTCAATTTCTTCAGTTCTGGGCCGAATTCGTCTTCTAGGGCAAACGTAAGCAACAAATTAGGGCAAGATGATGATCATGATCATGTGAACACACAGAAAACTTTCTACTGCAACTTCTGCAAGAGAGAGTTTTCTTCCTCACAGGCCTTAGGAGGGCATCAAAATGCACACAAACAAGAGCGAGCACTCGCAAAACGACGTCACGTCGCTGATCACTTTGGAACTTTAGGACGCCACCATCTTCCTTATTATACCAGTTACCCTTATTATGGGCATTTCAATTATCACAGGGCTCTTGGGGTTAGAATGGAGTCCATGATTCACAAGCCGTCTTATAGCCCTAATTACAAGTTCAGACGTGATCACCATGCTCAAGATAGGTTTGGAATAACGGCAAGTTCTGGAACTTCAAGGCTTGAGGAGGTTAATACTATTGGCCCTCTGGTTCAGTACTTTGGCCATAATTCTTCTTCAACTAGTGCTGGTGATCAACGTGTCGAGTTCAAACCAGAAGAAGCTTCAAAAGGCAATGATAATAATCCTGATTTTTCGGGTCTTGATTTGTCTCTAAAGCTTTGA 738 0.435 MAAHGVDHHHSPSDASSISGGSKGNSSREVIENQKMKMITLSSDDSVQGSKVELNFFSSGPNSSSRANVSNKLGQDDDHDHVNTQKTFYCNFCKREFSSSQALGGHQNAHKQERALAKRRHVADHFGTLGRHHLPYYTSYPYYGHFNYHRALGVRMESMIHKPSYSPNYKFRRDHHAQDRFGITASSGTSRLEEVNTIGPLVQYFGHNSSSTSAGDQRVEFKPEEASKGNDNNPDFSGLDLSLKL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2820 245 Gene3D Classic Zinc Finger 64 128 - -
Dere04g2820 245 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 34 245 IPR044246 GO:0009788
Dere04g2820 245 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Dere04g2820 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Dere04g2820 245 MobiDBLite consensus disorder prediction 54 71 - -
Dere04g2820 245 MobiDBLite consensus disorder prediction 1 32 - -
Dere04g2820 245 MobiDBLite consensus disorder prediction 12 32 - -
Dere04g2820 245 MobiDBLite consensus disorder prediction 54 80 - -
Dere04g2820 245 SUPERFAMILY beta-beta-alpha zinc fingers 85 115 IPR036236 -
Dere04g2820 245 MobiDBLite consensus disorder prediction 209 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2820 Dere-ChrDere04 39198457 39200585 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2820 85 164 C2H2 Transcription Factor Family AT5G25160 51.220 3.83e-19 81.6