Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2814 ATGCAACAACTTCTGAGTATGGGGTTTCCAGACGAGTTGGCCGCCCAAGCCTTGGCTGCTACCGGAGGCAAATCCACCATTAAAGCCACCGAATGGATCTTAAACCACAAAGCCACTAACACTTCCACTTCTAACCATGCTTCTAACTCAAATCCTTCTCCAGTTCAGCCCAAGCTTGATCGCTTCTTCCAATTTCAATCCAAGCCCTCTCCCACAGTCACAGCCACAGCACAATCAATTCAACAGCAACAACAAGATGACGCAGATTTTGATTTAGAAGAATCAACCCCAAACCCTAGCTCATCAACCAAACGTCTCAAACCATCGCCATCGAACACTATACACACTTCTCCCATCTTTTCGAATCGTTTTCAACGTCCAAACAGTGCAGATAAGGGCAAGGTAGAGGTCCACGAGCCCTTATATGAGCGAATGCGTCCCAGAACCATTGATGATGTTATCGGTCAGGATCATCTGCTTGCTCCTAATTCTCTCCTTCGCTCCGCGATTGAACGCGGCCGTCTTCCCTCCATCATCTTCTGGGGTCCTCCTGGTAGTGGTAAGACTTCTATTGCCAAAGCCATTGTTAATTCCGCAAGTTCTCAGAAACAACAATGCCATGGTTATCACTTTGTTTCGTTATGTGCTGTGAGTAGTGGTGTTAAGGATGTGAGGGATGCGGTTGACAAGGCTAGGAAATTGAGAGTTAAAAGCAATCAAAGAACTGTTTTATTTGTGGATGAGGTTCACAGGTTTAACAAGTCTCAACAGGACTCTTTCTTGCCGGTCATTGAAGATGGGAGTATTGTCTTCATCGGGGCCACCACTGAGAACCCTTCTTTCCATTTGATTACACCATTGCTGTCACGGTGTTGTGTACTTACCCTAAACCCCTTGAAACCCCATAATGTTGCAGTGATTCTAAAGGCGGCTGTGGATAATTTGGACAAAGGATTGGTGCAAAGCGTCGGTTTTCAAGTTGATGTAGCTGAGGATGTAATTACTTTTATGGCCAACAATTGTGATGGTGATGCTCGAGTGGCATTGAATGCATTGGAGATTGCAGCTATTACAGCTGCTGCTCGGTCACAAGATGTTAAGCAATCTACGGATGTCAAAGAAACAGATGGCATGCATAGTCAGATAAACCAAGAAAATAAGGTTGGTCCATCTGTTAATATTGTTACCCTTGATGATGCAAAGGAGGCTCTTCAGTGCAAGCACCTTGCTTATGATAAAGCTGGAGAAGAGCACTATAATTTAATTAGCGCACTACACAAATCAATGAGGGGAAGTGATGCTGATGCAGCGATTTATTGGTTGGCAAGAATGTTGGAAGGAGGTGAGGAGCCCCTTTACATTGCACGAAGACTAATAAGGTTTGCAAGTGAAGATGTTGGATTGGCTGATCCGTCTGCTCTCAGTCAGGCTGTTTCATGCTACCAAGCCTGCCACTTTTTGGGTATGCCTGAGTGCAATGTGATTCTTTCACAGTGTGTTGCTTACTTGGCTTTAGCTCCTAAATCGGTCGCTGTTTATCGGGCAATAGAAGCTGCTCAGAAGGTAGTAAGGCAATCAATAGGACAGAACGAGGGAGTGCCTCTTCATCTGAGGAATGCACCGACCAAACTCATGATGGAACTTGGTTATGGCAAGGGATACGTATATCCCCCTGACAATCCCTCTTTGACACAGAGCTACTTGCCACCCTTTCTAAATGGATACAAGTTCCTTGATTGGCCTGACAGGAATAGCTCCGATGGACAAAAATGTTAA 1776 0.451 MQQLLSMGFPDELAAQALAATGGKSTIKATEWILNHKATNTSTSNHASNSNPSPVQPKLDRFFQFQSKPSPTVTATAQSIQQQQQDDADFDLEESTPNPSSSTKRLKPSPSNTIHTSPIFSNRFQRPNSADKGKVEVHEPLYERMRPRTIDDVIGQDHLLAPNSLLRSAIERGRLPSIIFWGPPGSGKTSIAKAIVNSASSQKQQCHGYHFVSLCAVSSGVKDVRDAVDKARKLRVKSNQRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCCVLTLNPLKPHNVAVILKAAVDNLDKGLVQSVGFQVDVAEDVITFMANNCDGDARVALNALEIAAITAAARSQDVKQSTDVKETDGMHSQINQENKVGPSVNIVTLDDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDADAAIYWLARMLEGGEEPLYIARRLIRFASEDVGLADPSALSQAVSCYQACHFLGMPECNVILSQCVAYLALAPKSVAVYRAIEAAQKVVRQSIGQNEGVPLHLRNAPTKLMMELGYGKGYVYPPDNPSLTQSYLPPFLNGYKFLDWPDRNSSDGQKC 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2814 591 Gene3D - 129 297 IPR027417 -
Dere04g2814 591 Gene3D - 509 588 - -
Dere04g2814 591 Pfam ATPase family associated with various cellular activities (AAA) 178 291 IPR003959 GO:0005524|GO:0016887
Dere04g2814 591 MobiDBLite consensus disorder prediction 94 128 - -
Dere04g2814 591 FunFam AAA-type ATPase family protein 299 375 - -
Dere04g2814 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 371 IPR027417 -
Dere04g2814 591 SMART AAA_5 174 299 IPR003593 GO:0016887
Dere04g2814 591 Pfam AAA C-terminal domain 326 430 IPR032423 -
Dere04g2814 591 Gene3D - 1 38 - -
Dere04g2814 591 Gene3D - 299 373 - -
Dere04g2814 591 SUPERFAMILY UBA-like 1 37 IPR009060 GO:0005515
Dere04g2814 591 MobiDBLite consensus disorder prediction 69 134 - -
Dere04g2814 591 FunFam Replication-associated recombination protein A 132 298 - -
Dere04g2814 591 SUPERFAMILY post-AAA+ oligomerization domain-like 415 584 IPR008921 GO:0003677|GO:0006260
Dere04g2814 591 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 2 587 - -
Dere04g2814 591 CDD AAA 154 291 - -
Dere04g2814 591 Pfam UBA/TS-N domain 2 33 IPR015940 -
Dere04g2814 591 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 36 IPR015940 -
Dere04g2814 591 FunFam Putative AAA family ATPase 405 508 - -
Dere04g2814 591 MobiDBLite consensus disorder prediction 69 86 - -
Dere04g2814 591 Pfam MgsA AAA+ ATPase C terminal 431 579 IPR021886 -
Dere04g2814 591 Gene3D - 405 508 - -
Dere04g2814 591 CDD HLD_clamp_RarA 299 405 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2814 139 299 Core DNA Replication Machinery Family AT1G21690 25.731 4.45e-09 56.6