LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere04g2792	ATGGCCCAAAACAAGGCCCACTTTTATAACGGCGTCCAAACTTCAGCGACCGAGGTGACGAGCTCCGATCTGCTCATCTCGTATTCCGATTACACCATGGGCTCAAGGAAGGCTGACAATTCTCACTCAGGCGATGGTGCCAGTCCTGGCAAAATCTTCATTGGAGGTTTAGCCAGAGACACGACATTGGAGACTTTCGTCAAGTATTTTGAGAAGTATGGTGAGATAACAGACTCGGTGATAATGAAAGATCGGCACACGGGTCGACCTAGGGGTTTCGGTTTCATTACCTATGCAGATCCTTCTGTTGTTGACCATGTTATTCAGGAGAACCATGTGATCAATGGCAAGCAGGTTGAGATCAAAAGGACTATTCCAAAGGGTTCATCACAAGCTAATGATTTTAAAACTAAGAAAATCTTTGTTGGTGGTATTCCAACTGCAGTAAGTGAAGATGAATTGAAGAACTTCTTTTCAAAGTATGGGAAGGTTGTGGAACATGAGATAATACGAGATCATACTACTAAACGTTCTCGGGGGTTTGGATTTGTTGTGTTTGACAGTGAAAAAGTTGTTGATAATTTACTGGCAAATGGAAATATGATTGATATGGCAGGTACTCAGGTTGAGATCAAGAAGGCTGAACCCAAGAAAGCCTCAAACCCAGCGTCTTTTCCTCCATTTGGTAGTGATAGGGCACGCCCATACAGTGATGGTTATGGTGGGTTTGGCGAATCTTATAGCAGTTTTGGCAGTGGTGGTTTTGGTCCTCCTTCTTATAGGTCACTTGGAGGTTTTGGCAGCAGGCTTTCTGATTATGGTGGGTATGGTGGTGGAGATGAATTTGGTGATAGTTTTGGGGGTTATGGTGGTGGAGGTGGTTTTGCTGGCTATCGAGGAGAGTCATCATTTGGCTATTCTAGTCGCTATGGTTCCTATATGGGGGGCCTTGGCAGTGCATATGGTGGAAGTGGGCTAGGTGCGTACGGGCGAGGTGCTGGGGGCTTTGCAAGCTATGGTGGACCAGGTTCTGCTGGGGCTTATGACTCTGGCCCTGGTGCTGGCTATGGTGGGCCAGGGGCACTGTATGGTAGTAGAGGAAGTTATGGTGGCAGTAGTCGCTACCATCCTTATGCAAGATAG	1143	0.4663	MAQNKAHFYNGVQTSATEVTSSDLLISYSDYTMGSRKADNSHSGDGASPGKIFIGGLARDTTLETFVKYFEKYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDHVIQENHVINGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTAVSEDELKNFFSKYGKVVEHEIIRDHTTKRSRGFGFVVFDSEKVVDNLLANGNMIDMAGTQVEIKKAEPKKASNPASFPPFGSDRARPYSDGYGGFGESYSSFGSGGFGPPSYRSLGGFGSRLSDYGGYGGGDEFGDSFGGYGGGGGFAGYRGESSFGYSSRYGSYMGGLGSAYGGSGLGAYGRGAGGFASYGGPGSAGAYDSGPGAGYGGPGALYGSRGSYGGSSRYHPYAR	380

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere04g2792	380	SUPERFAMILY	RNA-binding domain, RBD	134	245	IPR035979	GO:0003676
	Dere04g2792	380	Gene3D	-	130	256	IPR012677	-
	Dere04g2792	380	Gene3D	-	50	129	IPR012677	-
	Dere04g2792	380	FunFam	Heterogeneous nuclear ribonucleoprotein 1	131	255	-	-
	Dere04g2792	380	PANTHER	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	33	380	-	-
	Dere04g2792	380	SMART	rrm1_1	139	212	IPR000504	GO:0003723
	Dere04g2792	380	SMART	rrm1_1	51	122	IPR000504	GO:0003723
	Dere04g2792	380	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	138	216	IPR000504	GO:0003723
	Dere04g2792	380	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	50	126	IPR000504	GO:0003723
	Dere04g2792	380	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	52	118	IPR000504	GO:0003723
	Dere04g2792	380	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	140	200	IPR000504	GO:0003723
	Dere04g2792	380	SUPERFAMILY	RNA-binding domain, RBD	43	130	IPR035979	GO:0003676
	Dere04g2792	380	FunFam	Heterogeneous nuclear ribonucleoprotein 1	49	130	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere04g2792	Dere-ChrDere04	38596342	38598661	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere04g2792	36	202	Eukaryotic Initiation Factors Gene Family	AT1G71770	26.455	2.08e-13	69.7