Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2784 ATGTCGAATCCTAAGCGCGCGCGTGAGTCTGTGACAACTAGTGCAGATGATTCGTCCCTTCGATATGGCACTGCGAATGCTTCGGAATCGAATGGGCAATCCTCCGTCAGAAGCGCGAAGACTTATCCGCCTCCGAACGCCCTCCATGAGGACCTTGTTCGCAGTACGGAGCTTTTCTGGACAAACTTTCGGCATTTTCACAATTCCTTGGGTACTAAATTTAAAGTTCCTACTATAGGAGGAAAGCCACTAGATCTATATCACCTTTTTATGGAAGTCACTTCTCGTGGTGGGCTGGAAAAGGTGATTGGAGATCGGAAATGGAAGGAAGTGATTACAGCCTTCAAATTCCCTGATACCATAACCAGCGCATCATTTGTATTGCGCAAATACTATCAATCACTGCTTTATGACTTCGAGCAGGTTTATTACTTTCGGAAGCAAGCCCCTTCTATTTCAACGCATGATTCTGCTAACAGCGGCTTATCAAGCTTAAAGGAAGGTATTGCTGCAAATGATTTACCAGTTAATCTACCTGAGCATCATCTTGGCTCTTTGGTGCCTGGTACCATTGATTTGAAATTTGATGGTGGATATGTAGTTACTGTGAATCTGGGTTCTGACCAGTTAAAAGGTATATTGTATCATGTTCCTCTCAATGCATCCCAGAGTTCTAATACTGCATCCATACCTACTTCTAAGAATCGGAAGAGATCAAGGTTGGGTTTACATGATCCATCACGGCCCAAATCAAACAGGAGTGGCTACAATTTCTTCTTTGCTGAGCACTATGCCAGGCTAAAGCCATCGTACTATGGGCAAGAGAGAGCAATTAGTAAGAAGATTGGATTTTTATGGAACCACCTCACAGAAGGAGAAAGACAGATTTATCAGGAGAAAGGACGGAGAGACAAGGAAAGATACAGGACTGAAATGTTGGAGTACAAATCATCCAATACTTCAACTCCTCAATAG 975 0.4328 MSNPKRARESVTTSADDSSLRYGTANASESNGQSSVRSAKTYPPPNALHEDLVRSTELFWTNFRHFHNSLGTKFKVPTIGGKPLDLYHLFMEVTSRGGLEKVIGDRKWKEVITAFKFPDTITSASFVLRKYYQSLLYDFEQVYYFRKQAPSISTHDSANSGLSSLKEGIAANDLPVNLPEHHLGSLVPGTIDLKFDGGYVVTVNLGSDQLKGILYHVPLNASQSSNTASIPTSKNRKRSRLGLHDPSRPKSNRSGYNFFFAEHYARLKPSYYGQERAISKKIGFLWNHLTEGERQIYQEKGRRDKERYRTEMLEYKSSNTSTPQ 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2784 324 CDD HMG-box_AtHMGB9-like 249 315 - -
Dere04g2784 324 SUPERFAMILY ARID-like 50 154 IPR036431 GO:0003677
Dere04g2784 324 MobiDBLite consensus disorder prediction 223 250 - -
Dere04g2784 324 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 249 316 IPR009071 -
Dere04g2784 324 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 33 321 - -
Dere04g2784 324 Gene3D - 45 160 IPR036431 GO:0003677
Dere04g2784 324 ProSiteProfiles ARID domain profile. 53 144 IPR001606 GO:0003677
Dere04g2784 324 CDD ARID_HMGB9-like 57 140 IPR045303 GO:0003677
Dere04g2784 324 MobiDBLite consensus disorder prediction 1 41 - -
Dere04g2784 324 Pfam HMG (high mobility group) box 249 316 IPR009071 -
Dere04g2784 324 SMART bright_3 54 145 IPR001606 GO:0003677
Dere04g2784 324 Pfam ARID/BRIGHT DNA binding domain 57 140 IPR001606 GO:0003677
Dere04g2784 324 MobiDBLite consensus disorder prediction 1 43 - -
Dere04g2784 324 SMART ARID_2 50 140 - -
Dere04g2784 324 Gene3D High mobility group box domain 231 323 IPR036910 -
Dere04g2784 324 SUPERFAMILY HMG-box 243 320 IPR036910 -
Dere04g2784 324 SMART hmgende2 248 317 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2784 Dere-ChrDere04 38478234 38487022 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2784 33 321 ARID Transcription Factor Family AT3G13350 51.948 3.82e-104 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Dere04g2784 ARID 2.7e-19 CL0123