Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2729 ATGGGTTATATATGTGATTTTTGTGGAGAACATAGGTCCATGGTGTACTGCCGTTCTGATGCTGCATGCTTGTGTTTGTCATGCGATCGAAATGTTCATTCTGCTAATGCCCTTTCAAGGCGTCATTCAAGAACCCTATTATGTGAGAGATGCAATTCACATCCTGCCCTTGTAAGGTGTGCTGAAGAGAGGATTTCACTTTGTCAGAATTGTGATTGGTTGGGTCACAGTACTTCTACATCTACTTTGACACATAAGAGGCAAACAATCAATTGCTATTCAGGCTGCCCTTCAGCTGCAGAACTTTCTTCAATATGGTCTTTTGTCCTCGATATCCCTACTATAGGTGAATCTTCATGTGAGCAGGAACTGGGTTTGATGAGCATTAATGAGAACAGCAACAAGAGTGCTTCAGTTCCACCCAAAAACCAGAATGCATCTGGTTCAGCTCAAGTAACTGATATACACAGCATGAACAAGTCTTGGGTTGGGCCATCTTCAATGCCTGAGTCAAACTCAGAAACTCGTATTCCAGACCCGCTAGCTGGACCTGCCAATGAATGCCCGCCCAAGTTATACTGTCCCGGCACAAAAGGTCCCGGACTATGTGATGATGATAACCTTTACGGTGATTTTGACATGGATGAAGTGGATCTGAATCTTGAGAACTATGAGGAACTTTTTGGTGTGGCTCTTAGTCATTCTGAAGAGCTTTTTGAAAATGGTGGAATTGATAGCTTGTTTGGGACAAAGGAAATGTCTGCTGGCGATTCCAATTGTCAGGATGCTGCTGCTGCTGAGGGGTCATCGATTGGACTGGTCAATGCAATGCAACCAGTATGCAGCAATGCAGCATCTGCAGATTCTATGTTGAGTTCTAAAACCGAACCAATTCTGTGTCTTACTGGAAGGCATGCACAATCAAACCTTTCATTTTCTGGCGTTACTGGAGAGAGTAGTGGTGCAGACTATCAAGACTGTGGTGCTTCTTCGATGCTTCTCATGGGAGAGCCTCCTTGGTGCGCCCCATGCCCTGAGAATTCCCTACAAACTGCTAACCGAAGTAATGCTGTCATGCGTTACAAGGAAAAGAAGAAGACTCGCCAGTTTGAAAAGAAAGTGAGGTATGCCTCTCGCAAGGCTAGGGCTGATGTTCGAAGACGTGTGAAGGGCCGTTTTGTGAAAGCTGGCGAAGCGTACGATTATGACCCTTTGAGTCAAACCAGAAGCTACTGA 1236 0.4506 MGYICDFCGEHRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNSHPALVRCAEERISLCQNCDWLGHSTSTSTLTHKRQTINCYSGCPSAAELSSIWSFVLDIPTIGESSCEQELGLMSINENSNKSASVPPKNQNASGSAQVTDIHSMNKSWVGPSSMPESNSETRIPDPLAGPANECPPKLYCPGTKGPGLCDDDNLYGDFDMDEVDLNLENYEELFGVALSHSEELFENGGIDSLFGTKEMSAGDSNCQDAAAAEGSSIGLVNAMQPVCSNAASADSMLSSKTEPILCLTGRHAQSNLSFSGVTGESSGADYQDCGASSMLLMGEPPWCAPCPENSLQTANRSNAVMRYKEKKKTRQFEKKVRYASRKARADVRRRVKGRFVKAGEAYDYDPLSQTRSY 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2729 411 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Dere04g2729 411 Pfam CCT motif 354 396 IPR010402 GO:0005515
Dere04g2729 411 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Dere04g2729 411 CDD Bbox1_BBX-like 47 90 - -
Dere04g2729 411 ProSiteProfiles CCT domain profile. 354 396 IPR010402 GO:0005515
Dere04g2729 411 SMART bboxneu5 4 47 IPR000315 GO:0008270
Dere04g2729 411 SMART bboxneu5 48 90 IPR000315 GO:0008270
Dere04g2729 411 CDD Bbox1_BBX-like 4 47 - -
Dere04g2729 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2729 Dere-ChrDere04 37091567 37095345 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2729 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 57.075 2.31e-154 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Dere04g2729 CCT 2.3e-16 CL0281