Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2717 ATGGGGAAGCATCTTACTCTGCCATCGTGCTTTGGAACAGGGATGAACAGAGACCGAAGAAGAAGTAAGAGGCGCGTGAGCAGCAAATACAGAGAGAACGAAGAAAGAGTGATGCAGGGAGCCGCAGCCGACGGAGAGGCGGTGGACTTCGAGCCGGAGGACGATGACTTAATGGACGAAGATGGCGGCGCCGACGCTGACGCCTCCGCCTCTCCCCATGCTCCTCCTCTCCCCAAGCTCAAATCTGCCATCACTGGCGGCGCATCTTCCTCGCTCAACGGCCCTAAGAAAACCAAAGGCCGCGGCTTCCGTCAGGAAACCGATGCTGACCGTAACACCCGTCTTTCCGGATCCGATTTTGACTCTCTCACCACTGAGGGTGGGCCTGGTCCTCAACGATCCATTGAAGGTTGGATTATTTTGGTCACGGGTGTGCATGAGGAAGCACAAGAGGATGATCTGCAAAATGCATTTGGAGAATACGGAGAGATTAAGAATCTGCATTTGAATCTTGACCGTCGCACTGGTTTTGTCAAAGGTTATGCATTGATTGAATATGAGCATGCTGAGGAAGCACGAAATGCAATAGAGAATTTGAATGGATCTGAACTTCTTACTCAAACAATTTATGTTGACTGGGCTTTCAGCAGTGGACCTATTAATGGGTCAATCAGAAGAAAAAATGCTAGACCAACCCGTGAAAGACGCTCAAGGAGTCCTCGGAGGAGATACTGA 735 0.5048 MGKHLTLPSCFGTGMNRDRRRSKRRVSSKYRENEERVMQGAAADGEAVDFEPEDDDLMDEDGGADADASASPHAPPLPKLKSAITGGASSSLNGPKKTKGRGFRQETDADRNTRLSGSDFDSLTTEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYEHAEEARNAIENLNGSELLTQTIYVDWAFSSGPINGSIRRKNARPTRERRSRSPRRRY 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2717 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 209 IPR000504 GO:0003723
Dere04g2717 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Dere04g2717 244 PRINTS RNA binding motif protein 8 family signature 92 104 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Dere04g2717 244 PRINTS RNA binding motif protein 8 family signature 185 201 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Dere04g2717 244 PRINTS RNA binding motif protein 8 family signature 203 215 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Dere04g2717 244 PRINTS RNA binding motif protein 8 family signature 129 143 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Dere04g2717 244 MobiDBLite consensus disorder prediction 224 244 - -
Dere04g2717 244 PANTHER RNA-BINDING PROTEIN 8A 44 243 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Dere04g2717 244 CDD RRM_RBM8 132 219 IPR033744 GO:0003729
Dere04g2717 244 MobiDBLite consensus disorder prediction 99 115 - -
Dere04g2717 244 Gene3D - 86 240 IPR012677 -
Dere04g2717 244 MobiDBLite consensus disorder prediction 47 63 - -
Dere04g2717 244 SMART rrm1_1 139 212 IPR000504 GO:0003723
Dere04g2717 244 MobiDBLite consensus disorder prediction 1 134 - -
Dere04g2717 244 MobiDBLite consensus disorder prediction 229 244 - -
Dere04g2717 244 SUPERFAMILY RNA-binding domain, RBD 131 242 IPR035979 GO:0003676
Dere04g2717 244 FunFam RNA-binding protein 8A-like 68 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2717 Dere-ChrDere04 36800610 36810525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2717 140 214 Eukaryotic Initiation Factors Gene Family AT3G11400 29.333 1.61e-08 52.4