Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2702 ATGGACAGAAAAGCGGTTACAGGTGAACCAGCAAGAATTGCCGTGAAACCTATTGACCGTTACAGACCTTTAACGATGTTGCCTAGGTGCCACGGACATGACGAGTACGACACAAGACACAACACCACTCGGTTTGGTTTTCTCGGGGTTTTCTTCCCTGATACTGACAAAGCAATTTTGATGGGTGCATCATCTGGCTCCAACATCAACCAGCAGCCTTCTTCAAAAATGCTACCTCCACGTCAGCAATCACGTGTTGGAGGACTACAAACTTCACTATCCCTAGTTTCTTCAGATCCTCACCTCTCTCCGGAGGAACCTAGATCAAACTCTGACAACATTCGAGAATCTCCTACTGAAAGTGCCAGTTCTCGAGAAACTTGGCCCACTGCTGATGCCATTGCAGCAAAAAAGATGGAGAATGGTAAAGCAGATACTGATTGCCCCGAGCAGTCAGTCATCCGTCGTGTTTCTAGTGCTGCCAAAATCACTCTTCAGGACATAACAAGAGAAAGCGTTGATATAATCTCTGAAAAGATGCATCATCTACCTGAAGAATTTTTAGAAGAGCTGAAGAACAGTCTTCGAGTTATCCTTGAGGGAGGGAATGGTTCTCAGCATAGGGAGGAATTTTTCATTTTGCAGAAGCTTGTTCAGAGTAGAACTGATTTAACTGCCAAGACATTGATTAGAGCACATCGTGTGCAGCTTGAAATCCTTGTTGCAATAAATACTGGAATTCAGGCATTTTTGCATCCTAACATCACTCTTTCACAAACTTCTCTCATTGAGATCTTTGTGTACAAGAGATGCAGAAATATAGCTTGTCAAAACCAGCTTCCAGCTGATGACTGTACCTGTGAAATATGCACCAATAGAAATGGTTTCTGCAATCTTTGCATGTGTGTAATCTGCAACAAGTTTGACTTTGAAGTAAATACATGCCGCTGGATTGGGTGTGATTTATGTTCCCATTGGACTCATACAGATTGTGCCATTCGTGATCAACTTATTTCCATGGGCCCTTCATCAAAGAGTGGAGCAGGACCAAGTGAAATGGTTTTCAGGTGTCATGCATGCAAGAGGACTTCAGAGCTGTTAGGTTGGGTTAAAGATGTTTTCCAGCATTGTGCGCCATCCTGGGATGGGGAGGCCTTAATTAGGGAACTTGATTTTGTTAGTAGGATCTTTCATGGTAGTAAAGACCCCCGAGGGAGGAAACTATATTGGAAGTGTGATGATCTAAAGGACAAAATGAAAAGTGGAATTGTGGAACCAAATGCTGCATGCCGGGCAATTTTGATGTTTTTCCAAGAGCTTGAGGTGGACTCCCCAAAGAGCTTGGAAAATGGAGAAAGTGGAAGGCTGATTGCTCCGCAGGAAGCATGCAATAGAATTGCTGAAGTAGTGCAGGAGGCTATAAGGAAGATGGAAATGGTAGCTGAGGAGAAGATGAGAATGTTCAAGAAGGCTCGCTTGGCTCTTGATGCTTGTGATCGAGAATTAGCAGACAAGGCAAGGGAAATGTCAGAACTCAAGATGGACAGGCAAAAAAAGAAATTACAAATAGAAGAACTGGAGAGAATCGTGAGGCTCAAAACTGCAGAGGCTGAGATGTTCCAGTCTAAGGCAAATGAGGCTAAACGTGAGGCTGAGAGGCTCCAGAGGATTGCTCTTGCCAAGTCGGATAAATCAGAGGAAGAATATACTAGCAACTACTTGAGACAACGATTAAGTGAGGCTGAAGCTGAGAAGCAATATCTCTATGAGAGGATCAAATTGCAGGAGAGTTCTCGTGCATCACAGAGCAGTAGTGGTGGTGACCCCTCTCAGATGCTGATGTACTCCAAAATCCAAGATCTGCTCTACAGTGTTCCTCCTAAGGCAGATAGTCAGCCTAATGAGCGTCACCCCTTCAGAACAAATCCATGA 1932 0.4405 MDRKAVTGEPARIAVKPIDRYRPLTMLPRCHGHDEYDTRHNTTRFGFLGVFFPDTDKAILMGASSGSNINQQPSSKMLPPRQQSRVGGLQTSLSLVSSDPHLSPEEPRSNSDNIRESPTESASSRETWPTADAIAAKKMENGKADTDCPEQSVIRRVSSAAKITLQDITRESVDIISEKMHHLPEEFLEELKNSLRVILEGGNGSQHREEFFILQKLVQSRTDLTAKTLIRAHRVQLEILVAINTGIQAFLHPNITLSQTSLIEIFVYKRCRNIACQNQLPADDCTCEICTNRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDQLISMGPSSKSGAGPSEMVFRCHACKRTSELLGWVKDVFQHCAPSWDGEALIRELDFVSRIFHGSKDPRGRKLYWKCDDLKDKMKSGIVEPNAACRAILMFFQELEVDSPKSLENGESGRLIAPQEACNRIAEVVQEAIRKMEMVAEEKMRMFKKARLALDACDRELADKAREMSELKMDRQKKKLQIEELERIVRLKTAEAEMFQSKANEAKREAERLQRIALAKSDKSEEEYTSNYLRQRLSEAEAEKQYLYERIKLQESSRASQSSSGGDPSQMLMYSKIQDLLYSVPPKADSQPNERHPFRTNP 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2702 643 Coils Coil 495 564 - -
Dere04g2702 643 MobiDBLite consensus disorder prediction 114 128 - -
Dere04g2702 643 PIRSF UCP025218 61 629 - -
Dere04g2702 643 MobiDBLite consensus disorder prediction 64 128 - -
Dere04g2702 643 MobiDBLite consensus disorder prediction 64 99 - -
Dere04g2702 643 SMART PHD_3 301 361 IPR001965 -
Dere04g2702 643 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 85 624 IPR004082 -
Dere04g2702 643 MobiDBLite consensus disorder prediction 593 643 - -
Dere04g2702 643 CDD PHD_OBE1_like 301 360 IPR047578 -
Dere04g2702 643 MobiDBLite consensus disorder prediction 595 612 - -
Dere04g2702 643 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 381 400 IPR004082 -
Dere04g2702 643 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 563 585 IPR004082 -
Dere04g2702 643 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 179 201 IPR004082 -
Dere04g2702 643 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 308 328 IPR004082 -
Dere04g2702 643 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 262 283 IPR004082 -
Dere04g2702 643 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 524 544 IPR004082 -
Dere04g2702 643 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 221 236 IPR004082 -
Dere04g2702 643 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 236 251 IPR004082 -
Dere04g2702 643 Pfam PHD - plant homeodomain finger protein 271 394 IPR032881 -
Dere04g2702 643 Pfam Coiled-coil region of Oberon 489 622 IPR032535 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2702 Dere-ChrDere04 36530355 36537988 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2702 271 373 PHD Gene Family AT5G57380 31.731 2.22e-09 58.5