Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2700 ATGTCTGTGAATCGAAAGCTCTCTGGGTTGAATGGCAGGATGCCACCAAGTTCCAAGTCAGGGAAGTCAAATGAGGATTTGCATGAGTCCAATTCTTCTCTCAGGAAATGCAAGAGGAAGAAGCCCTTTTTCATAAGGGTTCTTCTTGGTGTTGTTGCTCTGGGAATTGTGTGGTTCTTCATGAGTTTTCACGGTGAATCGTTGATGAAGAGGAAGGAGAAAAGGTGGGGTGATTGTGAAGAGAGAGCTCGAATCTTGCTACAACGTCACAATGTCAGCAAAAAGCAGCTTCATGCGTTGGTTTCCTTGTTCTCTGTATCAGATCAGATTTTATCCCAATGTATCCACGAAAGAGGAGTACAAAATCTGTTCAGCAGTGACATTGCCAGTACTTCACAGTTGATATGTTCAGAGAATCAGGAGTTCCGAAAGGAGGATACGTGTGTCACAGACAAAGTAGAACTTATAGAACAATGCCCAGTTCTCACTGATCATGTTCAGAGAAACCTGGAATCATCACAGCTAGTGGAAAAAACTGTATCATTGGCCTCACACTCTGCGCTTATGTCCAATTTGGTTTATAGATTGCTCCATGGAAAGAACATCATGCAGTCATGGTTGTTGGAGATATGTGCAATTCAAGGTTGTCTGAGTTTGTCTATAGGATGCTGGTGGATTATTGTTGGAATTACAATTTGCTGCAGATCATCTGGCGTCCCTTTACTTTGGAGGATTCCAAATCAAAAGCTGGTTTCACAGCACAAGCAACTGAAGCATTTGGCCAGGCAAAATCCAAAGAGTGCTGGGAGGTGGAGGAAAAAGTTTCTAATTACATTTGTGTTACTTGGAATAGTTGGGTCTATTTGGTTATTCTGGCGCTTGAACAAAGATATTATGCTGAGGAGAGAAGAAATGCTTACCAATATGTGTGATGAGCGAGCCCGTATGCTGCAGGATCAGTTCAACGTGAGCATGAATCATGTTCATGCTCTGGCTATTCTTGTATCCACTTTTCACCATAGTAAACATCCTTCTGCCATTGACCAGAAAAGTTTTGGAGAATACACAGAGAGAACAGCATTTGAGAGACCACTTACTAGTGGTGTTGCTTATGCTCTGAAAGTTCTCCACTCTGATAGAGAGCATTTTGAAAAGCAGCATGGGTGGACAATTAAGAAAATGGAAACTGAGAATGAGACACTTGTCCAAGATTGTATTCCAGAAAATCTGGATCCTGCGCCCATTCAAGATGAATATGCACCTGTGATATTTGCTCAAGAAACTGTTTCTCATATTGTATCCATTGACATGATGTCAGGAAAGGAGGACCGTGAGAATATCTTGCGAGCAAGGGCAACTGGAAAGGGGGTGCTAACATCTCCGTTTAAACTACTAAAGTCGAATCACTTGGGTGTTGTACTTACATTTGCTGTCTATAATGCTAATTTTCCTCCAGATGCTACACCAGAGCAGCGCATTGAAACTACTGTTGGGTATTTGGGTGCATCCTACGATGTTCCATCACTAGTGGACAAGCTACTGCACCAACTTGCCAGCAAGCAAACCATTGTTGTGAATGTTTACGATACAACTAATGCATCTGCACCCATTACAATGTATGGTACTGATGTTGTTGATACTGGTCTACAACGAATTAGCCATCTAGATTTTGGGGATCCTCTGCGAAAACATGAGATGCATTGCAGGTTCAAGCACAAGACTCCACTACCTTGGACAGCAATCAATGCATCAGTTGGAGTACTTGTTATTACTTTGCTTCTTGGTCATATTTTTTACGCAGCAATCAATCGAATAGCAAAAGTGGAGGATGACTATCGGAAAATGAGGGAGCTCATGGTTCAAGCTGAAGCTGCAGATGTGGCAAAATCTCAGTTTCTTGCTACGGTTTCACATGAGATTAGGACTCCAATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGACACTGAACTAGATGAAAGCCAGATGGATTATGCTCAGACTGCTCACAGGAGTGGTAAAGATCTTATATCAGTGATAAATGAGGTTCTTGATCAGGCTAAGATTGAGGCAGGAAAACTTGAACTTGAAGCTGTAGAGTTTGATCCACGTTCTATTCTAGATGAAGTCCTATCACTTTTTTCTGGAAAATCTAGTGAAAAAGGAATTCAGTTGGCTGTTTACGTATCCAATCACGTGCCAGAAGTTGTCATTGGTGATCCTAAACGATTCCGGCAAACAATAACTAATCTTGTTGGAAATTCACTCAAGTTCACTCATGATAAAGGACACGTATTTGTATCAGTTCATCTGATGAATGAAGTAAAGAGCCCATTTCACATTATGGATGCAGTGCTGAGACAAGGGTTCCAGGATATGTCTGACGGAACCTATAATACATTGAGTGGCTTTCCTGTTGTCAATAGATGGAAAAGCTGGGCAAATTTCAGAAAGTTAAGCAGTATGAATTTGATGGATGAGCCTGGATTGATTCAATTACTAGTTACAGTTGAGGATACTGGGATAGGAATTCCTTTGGATGCACAAAGCCGCATATTCACACCTTTTATGCAAGCTGATAGTTCTACCTCGAGAACATATGGTGGGACTGGAATAGGATTGAGCATTAGTAAATGTCTAGTTGACCTCATGGGAGGAGAAATTGGATTTGTAAGCGAACCTGGAATTGGCAGTACTTTTTCTTTTACTGGAACTTTCAGGATAGGAAAAACCACTTCTCTGGATGCAAAGCAGCAACAGTGCAACCCTTTTGTTTCAGAGTTTCAAGAATTGAAAGCTTTAGTGGTAGATAGAAGAAAAATCCGTGCTGAAGTTACAAGATATTATCTGCAGAGGTTGGGGATGTCTGTGGATGTGACTTCCAGTCTGAACTCTGCTTACTCTTATCTATCTGCTTCTTGCAAAAAGAGTATTTCTCAACAGTTGGCAATGATTCTTATAGACAAGGATGTTTTGGATAAGGAAGGTAGTCTATTATATGTCATCAAGAAACAGAGGCAGAATGACATCAAAAGAGACCCCAAAAACTTTCCAAAGATTTTTCTCTTGGCAAACCACCTTAGCATTGATGAACATGATGAGCTGAAATCTGTTGGTATTGTGGTACTAATGAAACCTCTTTGGCTCAGTGCTTTGATTCACTGTTACAGAGAAGCCCTTGGAAGTGAAAAGAAGCAAATATATGGAAAGAAAGAATCAAACTTTGGGAACTTGCTAAGACAGAAACGAATTTTGGTGGTTGATGATAATGCGGTAAACAGAAAAGTAGCAGAAGGTGTTCTACAAAAATATGGGGCAAAAGTTACCTGCGTGGAGGGTGGCAGGGCTGCATTAAAGATGCTTAAGCCACCACATGATTTTGACGCTTGTTTCATGGATCTCCAGATGCCTGAAATGGACGGATTTGAAGTGACCAGGCAAATCCGCTGTCTGGAGAAAGAGGTAAATGAGAAAATTGCATGTGGTGAGGCATCAATAGAGATGTTTGGTAATGTGGCTCATTGGCACATGCCGATATTGGCGATGACCGCTGATGTAACTCAAGCTTCAAATGAAGAGTGGAGTAGGTGTGGGATGGATGACTATGTGTCTAAACCATTCGCGGAAGAACAGCTCTATATGGCATTGGCACATTGCTTGGGGTCTGGTTCGTAG 3678 0.4141 MSVNRKLSGLNGRMPPSSKSGKSNEDLHESNSSLRKCKRKKPFFIRVLLGVVALGIVWFFMSFHGESLMKRKEKRWGDCEERARILLQRHNVSKKQLHALVSLFSVSDQILSQCIHERGVQNLFSSDIASTSQLICSENQEFRKEDTCVTDKVELIEQCPVLTDHVQRNLESSQLVEKTVSLASHSALMSNLVYRLLHGKNIMQSWLLEICAIQGCLSLSIGCWWIIVGITICCRSSGVPLLWRIPNQKLVSQHKQLKHLARQNPKSAGRWRKKFLITFVLLGIVGSIWLFWRLNKDIMLRREEMLTNMCDERARMLQDQFNVSMNHVHALAILVSTFHHSKHPSAIDQKSFGEYTERTAFERPLTSGVAYALKVLHSDREHFEKQHGWTIKKMETENETLVQDCIPENLDPAPIQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARATGKGVLTSPFKLLKSNHLGVVLTFAVYNANFPPDATPEQRIETTVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTNASAPITMYGTDVVDTGLQRISHLDFGDPLRKHEMHCRFKHKTPLPWTAINASVGVLVITLLLGHIFYAAINRIAKVEDDYRKMRELMVQAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDESQMDYAQTAHRSGKDLISVINEVLDQAKIEAGKLELEAVEFDPRSILDEVLSLFSGKSSEKGIQLAVYVSNHVPEVVIGDPKRFRQTITNLVGNSLKFTHDKGHVFVSVHLMNEVKSPFHIMDAVLRQGFQDMSDGTYNTLSGFPVVNRWKSWANFRKLSSMNLMDEPGLIQLLVTVEDTGIGIPLDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPGIGSTFSFTGTFRIGKTTSLDAKQQQCNPFVSEFQELKALVVDRRKIRAEVTRYYLQRLGMSVDVTSSLNSAYSYLSASCKKSISQQLAMILIDKDVLDKEGSLLYVIKKQRQNDIKRDPKNFPKIFLLANHLSIDEHDELKSVGIVVLMKPLWLSALIHCYREALGSEKKQIYGKKESNFGNLLRQKRILVVDDNAVNRKVAEGVLQKYGAKVTCVEGGRAALKMLKPPHDFDACFMDLQMPEMDGFEVTRQIRCLEKEVNEKIACGEASIEMFGNVAHWHMPILAMTADVTQASNEEWSRCGMDDYVSKPFAEEQLYMALAHCLGSGS 1225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2700 1225 PANTHER TWO-COMPONENT HISTIDINE KINASE 277 1214 - -
Dere04g2700 1225 FunFam Histidine kinase 4 600 691 - -
Dere04g2700 1225 ProSiteProfiles Histidine kinase domain profile. 635 909 IPR005467 -
Dere04g2700 1225 PRINTS Bacterial sensor protein C-terminal signature 834 848 IPR004358 GO:0016310|GO:0016772
Dere04g2700 1225 PRINTS Bacterial sensor protein C-terminal signature 869 887 IPR004358 GO:0016310|GO:0016772
Dere04g2700 1225 PRINTS Bacterial sensor protein C-terminal signature 893 906 IPR004358 GO:0016310|GO:0016772
Dere04g2700 1225 PRINTS Bacterial sensor protein C-terminal signature 852 862 IPR004358 GO:0016310|GO:0016772
Dere04g2700 1225 Gene3D - 599 691 - -
Dere04g2700 1225 CDD HisKA 628 689 IPR003661 GO:0000155|GO:0007165
Dere04g2700 1225 MobiDBLite consensus disorder prediction 1 33 - -
Dere04g2700 1225 FunFam Histidine kinase 4 347 574 - -
Dere04g2700 1225 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 615 694 IPR036097 GO:0000155|GO:0007165
Dere04g2700 1225 SUPERFAMILY CheY-like 929 1062 IPR011006 -
Dere04g2700 1225 Gene3D - 692 911 IPR036890 -
Dere04g2700 1225 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 682 904 IPR036890 -
Dere04g2700 1225 Pfam Response regulator receiver domain 1085 1217 IPR001789 GO:0000160
Dere04g2700 1225 SUPERFAMILY CheY-like 1081 1222 IPR011006 -
Dere04g2700 1225 CDD HATPase_EvgS-ArcB-TorS-like 745 904 - -
Dere04g2700 1225 CDD REC_hyHK_CKI1_RcsC-like 1085 1217 - -
Dere04g2700 1225 Pfam CHASE domain 346 540 IPR006189 -
Dere04g2700 1225 Gene3D - 1078 1223 - -
Dere04g2700 1225 Gene3D - 925 1067 - -
Dere04g2700 1225 Gene3D - 294 346 - -
Dere04g2700 1225 Gene3D - 64 108 - -
Dere04g2700 1225 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 740 904 IPR003594 -
Dere04g2700 1225 SMART HKATPase_4 740 909 IPR003594 -
Dere04g2700 1225 SMART REC_2 1083 1217 IPR001789 GO:0000160
Dere04g2700 1225 Coils Coil 605 625 - -
Dere04g2700 1225 MobiDBLite consensus disorder prediction 1 21 - -
Dere04g2700 1225 ProSiteProfiles Response regulatory domain profile. 933 1061 IPR001789 GO:0000160
Dere04g2700 1225 ProSiteProfiles Response regulatory domain profile. 1084 1221 IPR001789 GO:0000160
Dere04g2700 1225 ProSiteProfiles CHASE domain profile. 343 567 IPR006189 -
Dere04g2700 1225 SMART HisKA_10 628 693 IPR003661 GO:0000155|GO:0007165
Dere04g2700 1225 Gene3D CHASE domain 347 574 IPR042240 -
Dere04g2700 1225 SMART CHASE_2 343 542 IPR006189 -
Dere04g2700 1225 Pfam His Kinase A (phospho-acceptor) domain 628 693 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2700 Dere-ChrDere04 36503374 36512919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2700 40 193 Miscellaneous Gene Families AT5G35750 29.268 3.91e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere04g2700 CHASE 1.9e-34 CL0165