Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere04g2688 ATGAGACGTAGAAGGTCAGCCATGGAACCAATTCAGAATAAGAAAGCTTGTAGGGCAACGTTTGAGAAGAGGAAAAAGGGGTTAATGAAGAAAGCTTACGAATTTTCCACTCTTTGTGGGGTTGATGTCTGCATGATAATCTATAGCCCTAATTTTGAAGGCCAAGCTCCTCAGCCTGTTGAAACATGGCCTCAACATTCAAGAGAGGATGAACTGAGAGGGCTTGTAACAAAGCTGGATGCTAAGATTGATGCTTGTAACCAAAGAATCAACATGCTGAACAAACAACGTTGTTGTCTAAAAGCACAAGTGCTGGAATCAGATAAGGCTATTCCAGATCCTAGAAGCCACCTGATCAATCTTATGCCCTCTCAAGCTCAGCTCTCCCTCGTTCCTACGAAGCCATATATTGATAATTATAACCAGATAGCATTTTGTGACCCTTCTCCTCTATCTCAGATGTTTCACTGTCATCAAAATGTTGAAAGCTCCTCACTGTCCTATTACAATGGTAGTGCACATACGATGCAGCCATGGACGCAAAACTCTGCTGCTCTGCAGAATCTACCACTTCTTCCACAATGGTTTCCAACTGATAATGGCTACTACAATATGCTTCAGCCTCAGATTCCCCACTACAAGCATTGA 648 0.4259 MRRRRSAMEPIQNKKACRATFEKRKKGLMKKAYEFSTLCGVDVCMIIYSPNFEGQAPQPVETWPQHSREDELRGLVTKLDAKIDACNQRINMLNKQRCCLKAQVLESDKAIPDPRSHLINLMPSQAQLSLVPTKPYIDNYNQIAFCDPSPLSQMFHCHQNVESSSLSYYNGSAHTMQPWTQNSAALQNLPLLPQWFPTDNGYYNMLQPQIPHYKH 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere04g2688 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dere04g2688 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Dere04g2688 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dere04g2688 215 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 87 - -
Dere04g2688 215 Coils Coil 76 96 - -
Dere04g2688 215 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Dere04g2688 215 CDD MADS_SRF_like 3 51 IPR033897 GO:0000981|GO:0000987|GO:0045944
Dere04g2688 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Dere04g2688 215 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Dere04g2688 215 SUPERFAMILY SRF-like 1 51 IPR036879 GO:0003677|GO:0046983
Dere04g2688 215 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere04g2688 Dere-ChrDere04 36384740 36385579 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere04g2688 1 88 Type I MADS-box Gene Family AT5G55690 40.000 3.80e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dere04g2688 SRF-TF 7.4e-19 No_clan